Bioblast manual: Difference between revisions
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- Automatic tables: they make a search to show the data, if you change, create or delete a new property. go to edit on the automatic table and delete or change the name on #ask xxxpage | - Automatic tables: they make a search to show the data, if you change, create or delete a new property. go to edit on the automatic table and delete or change the name on #ask xxxpage | ||
== Tables == | |||
If you want to create an automatic table you have to write down the next code (adapting it to your necessities), after the code you would find the explanation to each part. | |||
<nowiki> | |||
{{#ask:[[Category:O2k-Workshops]][[Additional label::IOC]] |?Has title=Reference |format=broadtable |limit=500 |offset=0 |sort=Was written by |order=descending}} [[Category:Publications]][[Category:O2k-Workshops]] | |||
*::'''#ask:[[Category:xxx]]''' will search on the category where the information is, you can search over more than one category, for that you have to write: '''#ask:[[Category:xxx]][[Category:xxx]]''' | |||
*::'''[[Additional label::xxx]]''' in this area you have to write what you want to search, in which field, for example those pages that in the keyword field contein O2k and are from year 2012 -->'''[[Keyword::O2k]][[Year::2012]]''' | |||
*::'''|?Has title=reference |?Was published in year|?Diseases''' With the question mark you selected the fields you want to appear in the table | |||
*::'''|format=broadtable|limit=500|offset=0''' this line define the format of the table, is necessary to write limit 500 because if it is too short it would not appear all of them. | |||
*::'''|sort= Was written by|sort=was published in year|sort=Has title|sort=Was submitted in year''' Here you selected the field from which the table will be sorted. | |||
*::'''|order=descending or ascending}}''' choose one of both options to order the table. | |||
Revision as of 10:00, 4 October 2013
Topics alphabetical
Abstracts
Addresses
Format for cities
- Format for city name in Form:MiPNetLab
- English city names are preferred: e.g. München is written as 'Munich', Wien as 'Vienna'.
- No puncutation: e.g. 'St Petersburg'
- Double city names: Hyphenated double names (e.g. Aber-Nein) are written as 'Aber-Nein'; if double names are separated by a space (e.g. Rio de Janeiro) use the space, 'Rio de Janeiro'.
- Double city names with lower case letters: use lower case as 'Rio de Janeiro'.
Figures
Format of figures
- Several figures do not change size when the zoom of the screen is modified, hence they change in proportion with the text. In many cases, a zoom of 125% is considered as a standard [Ctrl-O]. Therefore, formatting of such figures should be optimized at a zoom of 125%.
- Example: 933px in OroboPedia Template:Mainpage welcomebox title.
Persons
Format for persons
- Format for person names in Form:Person
- Format for author names in Form:Publication
- Format for person name in Form:MiPNetLab
- Family name_Initials (no punctuation). The initials should be confirmed from publications, such that author names and person names are linked.
- Double first names: no spaces and no hyphens are used, e.g. Jean-Pierre Mazat is written as 'Mazat JP'.
- Double family names: Hyphenated double names (e.g. Aber-Nein) are written as 'Aber-Nein'; if double names are separated by a space (e.g. Aber Ja) use the space, 'Aber Ja'.
- Special letters (umlauts or accented letters) should be written as: ä=ae, ö=oe, ü=ue, é=e; â=a; æ=ae, å=aa, ø=oe.
- Please see Discussion for more clarity
References (Publications)
Edit references
- Epub ahead of print - Update citation
- In prep - Update; see free text for comments
Format of references
- Format for references in Form:Publication.
- Article name (name of reference): Author_Year_Journal
- Author: The most constant part of the author name is the family name. For the same author, initials may vary occasionally between one or more initials. Hence reduction to the family name.
- Year: The year may change from the original year of Epub to the final year of publication. Then the article has to be moved to a new name.
- Journal:
- After 2011-Nov-21: The journal abbreviation in Bioblast follows exactly the format of the journal abbreviation used in Pubmed (exception: no final dot is permitted in Bioblast). Consequently, the punctuation in the journal abbreviation is also omitted in the full reference.
- There were initially two other formats for the Journal in the article name on Bioblast:
- Until 2011-Oct: A short 'slang' acronym, such as JEB, to keep the article name short. No standardization is possible, since not all journals have commonly used 'slang' acronyms, and the acronym is different from the standardized abbreviation used in the full reference.
- Until 2011-Nov-21: Standardized abbreviation, with punctuation, as used in the full reference until Nov 2011, such as J. Exp. Biol. The final dot in the article name, however, is truncated when the weblink is copied, such that the copied weblink becomes dysfunctional.
- If you add a publication, that does not include Oxygraph-2k data, then do not enter the MiPNet lab (otherwise the reference will be listed as O2k-publication)
Labelling references
- If you add a reference quickly to Bioblast without completing the labelling, add to 'Additional labels' the term 'Labels'. These references can be sorted automatically for later quality control of labelling.
Labels of publication (Add or delete)
1 Special pages/Filter: a Delete: Choose the filter you want to delete, and click on the property which the filter refers (if this property hasn´t got any values it never would appear on Special pages/ properties. i.e: Filter xxxf
- -a.1 Delete the property of the selected link (delete page) i.e: xxxpage
- -a.2 Delete the filter ie: xxxfilter
b Add:
- -b.1 Special pages/Semantic Drilldown/Create a filter : Name and select the property that this filter covers.
- -b.2 Special pages/Semantic form/Create a property: as string, save and them in edit add the values i.e:* xxxxProperty "Allows value" is a declarative property and can only be used on a property or category page.
2 Special pages /Templates:Publication (num 44) and click on its define category Publications. Edit and delete or add (depending the case) *Filter xxxfilter
3 Special pages/Form/Publications: Select edit
- - 3.1 scroll down and delete or add the name you wanted to appear and the name of filter or property in field
i.e: ! MiPareas: | area |-
- - 3.2 if you want to change the name that appears where MiPareas is, wrote the new one. i.e: !MiPareas_new
4 Special pages/Form/Abstracts:delete the property or add/ change a new property writing i.e: !New_property
5 Special pages/Template /labeling:
- - 5.1 Delete or add the property name on
''{{Labelling |new property to add }}''
- - 5.2 Scroll down to delete (or add) the array
i.e: {{#if: {{{filtername|}}} |'''name to appear on the table:''' {{#arraymap:{{{filtername|}}}|,|x|[[Property::x]]}} }}''
NOTES:
- Form use templates
- Filter and properties don´t accept & or - or , always separate the long name with ;
- Automatic tables: they make a search to show the data, if you change, create or delete a new property. go to edit on the automatic table and delete or change the name on #ask xxxpage
Tables
If you want to create an automatic table you have to write down the next code (adapting it to your necessities), after the code you would find the explanation to each part. <nowiki>
| Reference | |
|---|---|
| MiPNet19.07 IOC92 |  |
| MiPNet16.02 IOC64 |  |
| MiPNet22.01 IOC122 Schroecken AT |  |
| MiPNet22.08 IOC123 Xian CN | |
| MiPNet17.14 IOC72 Schroecken AT | |
| MiPNet22.02 IOC118 Hyderabad IN | |
| MiPNet22.03 IOC119 Innsbruck AT | |
| MiPNet22.04 IOC120 Barcelona ES | |
| IOC16 | |
| IOC48 | |
| MiPNet22.06 IOC121 Cologne DE | |
| MiPNet19.04 IOC89 La Jolla US | |
| MiPNet22.07 IOC124 Schroecken AT | |
| MiPNet22.15 IOC125 Prague CZ | |
| IOC43 Montevideo UY 2007 | |
| MiPNet23.01 IOC126 Innsbruck AT | |
| MiPNet23.02 IOC127 Szeged HU | |
| MiPNet23.03 IOC128 Cambridge UK | |
| MiPNet23.06 IOC130 Schroecken AT | |
| MiPNet23.10 IOC129 Lausanne CH | |
| MiPNet21.02 IOC111 Seattle WA US | |
| MiPNet04.06 IOC18 | |
| MiPNet20.03 IOC101 London | |
| MiPNet20.05 IOC104 Greenville | |
| MiPNet20.10 IOC106 Schroecken | |
| MiPNet20.11 IOC102 Wuhan CN | |
| MiPNet20.12 IOC103 Manaus | |
| MiPNet20.16 IOC105 Riga | |
| MiPNet21.01 IOC109 Schroecken AT | |
| MiPNet23.13 IOC131 Kuala Lumpur MY | |
| MiPNet21.04 IOC110 Melbourne AU | |
| MiPNet21.09 IOC113 Havana CU | |
| MiPNet21.10 IOC115 Schroecken AT | |
| MiPNet21.11 IOC116 Innsbruck AT | |
| MiPNet21.19 IOC114 Innsbruck AT | |
| IOC42 | |
| MiPNet21.18 IOC117 Kuala Lumpur MY | |
| MiPNet15.12 IOC57 Druskininkai LT | |
| MiPNet28.05 IOC158 Innsbruck AT | |
| MiPNet26.02 Virtual O2k-Workshop:Q-Module |  |
| MiPNet27.01 IOC152 Hamburg DE | |
| MiPNet26.07 Installation and startup support session | |
| MiPNet27.03 IOC154 Innsbruck AT | |
| MiPNet27.04 IOC155 Schroecken AT | |
| MiPNet27.02 IOC153 Innsbruck AT |  |
| MiPNet27.05 Schroecken BEC tutorial-Living Communications pmP |  |
| MiPNet27.10 IOC156 Ramat Gan IL | |
| MiPNet28.03 IOC157 Los Angeles US | |
| MiPNet25.16 Virtual O2k-Workshop HRR | |
| MiPNet28.01 IOC160 Schroecken AT | |
| MiPNet28.06 IOC161 Coimbra PT | |
| MiPNet28.02 IOC162 Schroecken AT | |
| MiPNet28.11 IOC163 Schroecken AT | |
| MiPNet28.13 IOC164 Innsbruck AT | |
| MiPNet28.12 IOC167 Schroecken AT | |
| IOC166 Ljubljana SI | |
| IOC165 Wuerzburg DE | |
| MiPNet24.02 IOC141 Schroecken AT | |
| MiPNet23.04 IOC133 Innsbruck AT | |
| MiPNet23.08 IOC134 Schroecken AT | |
| MiPNet23.07 IOC132 Budapest HU | |
| MiPNet23.09 IOC136 Melbourne AU | |
| MiPNet23.11 IOC137 Innsbruck AT | |
| MiPNet24.03 IOC138 Xiamen CN | |
| MiPNet24.01 IOC139 Schroecken AT | |
| MiPNet24.04 IOC140 Amsterdam NL |  |
| MiPNet20.02 IOC99 Cape Town | |
| MiPNet25.02 IOC Schroecken AT | |
| MiPNet25.03 IOC144 Innsbruck AT | |
| MiPNet24.15 IOC143 Haryana IN | |
| MiPNet25.06 IOC145 Innsbruck AT | |
| MiPNet25.04 IOC146 Padua IT | |
| MiPNet25.10 Distributor engagement Tokyo JP | |
| MiPNet17.08 IOC68 Schroecken AT | |
| MiPNet25.17 Virtual O2k-Workshop PhotoBiology | |
| MiPNet15.02 IOC56 | |
| MiPNet13.04 IOC47 | |
| MiPNet13.02 IOC46 | |
| MiPNet14.15 IOC54 | |
| MiPNet14.11 IOC53 | |
| MiPNet14.08 IOC52 | |
| MiPNet14.04 IOC51 | |
| MiPNet14.03 IOC50 | |
| MiPNet14.02 IOC49 | |
| MiPNet12.03 IOC37 | |
| MiPNet15.01 IOC55 | |
| MiPNet15.07 IOC59 | |
| MiPNet15.10 IOC60 | |
| MiPNet16.01 IOC61 | |
| MiPNet16.03 IOC65 | |
| MiPNet17.06 IOC66 | |
| MiPNet18.03 IOC75 Schroecken AT | |
| MiPNet18.01 IOC73 | |
| MiPNet10.08 IOC31 | |
| MiPNet07.05 IOC21 | |
| MiPNet07.02 IOC20 | |
| MiPNet08.17 IOC26 | |
| MiPNet08.11 IOC24 | |
| MiPNet08.02 IOC23 | |
| MiPNet09.11 IOC29 | |
| MiPNet09.05 IOC28 | |
| MiPNet09.02 IOC27 | |
| MiPNet18.07 IOC79 | |
| MiPNet10.02 IOC30 | |
| MiPNet11.06 IOC36 | |
| MiPNet11.03 IOC35 Schroecken | |
| MiPNet11.02 IOC32 | |
| MiPNet12.24 IOC44 | |
| MiPNet12.19 IOC41 | |
| MiPNet12.14 IOC39 | |
| MiPNet12.04 IOC38 | |
| MiPNet18.19 IOC81 | |
| MiPNet19.11 IOC96 Schroecken AT | |
| MiPNet19.16 IOC98 | |
| MiPNet19.08 IOC93 | |
| MiPNet19.15 IOC97 | |
| MiPNet18.16 IOC87 Spitsbergen | |
| MiPNet18.17 IOC83 | |
| MiPNet18.18 IOC77 | |
| MiPNet19.10 IOC95 Obergurgl | |
| MiPNet18.20 IOC78 | |
| MiPNet17.19 IOC69 | |
| MiPNet17.20 IOC71 | |
| MiPNet16.04 IOC62 | |
| MiPNet16.05 IOC63 | |
| MiPNet15.11 IOC58 | |
| MiPNet20.01 IOC100 Schroecken | |
| MiPNet18.02 IOC74 | |
| MiPNet19.05 IOC90 Bolzano IT | |
| MiPNet19.06 IOC91 Philadelphia US | |
| MiPNet18.04 IOC76 | |
| MiPNet06.09 IOC19 | |
| MiPNet18.15 IOC86 | |
| MiPNet18.14 IOC85 | |
| MiPNet18.13 IOC84 Alaska | |
| MiPNet19.09 IOC94 Shanghai CN | |
| MiPNet19.02 IOC88 Schroecken AT | |
| MiPNet18.11 IOC82 | |
| MiPNet17.07 IOC67 | |
| MiPNet17.10 IOC70 | |
- #ask: will search on the category where the information is, you can search over more than one category, for that you have to write: #ask:
- xxx in this area you have to write what you want to search, in which field, for example those pages that in the keyword field contein O2k and are from year 2012 -->O2k2012
- |?Has title=reference |?Was published in year|?Diseases With the question mark you selected the fields you want to appear in the table
- |format=broadtable|limit=500|offset=0 this line define the format of the table, is necessary to write limit 500 because if it is too short it would not appear all of them.
- |sort= Was written by|sort=was published in year|sort=Has title|sort=Was submitted in year Here you selected the field from which the table will be sorted.
- |order=descending or ascending}} choose one of both options to order the table.
