Difference between revisions of "MitoEAGLE data: muscle"
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Revision as of 14:59, 27 April 2016
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News and Events |  |
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Working Groups | Short-Term Scientific Missions | Management Committee | Members |  |
COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping
MitoEAGLE data: muscle
WG2
- MITOEAGLE data repository in muscle and other tissues
WG2 Description
- During the past 10 years, a dramatically increasing number of studies report respirometric data on human muscle tissue (e.g. Christiansen 2015 Am J Physiol). Muscle mitochondrial function is particularly studied in genetically engineered mouse models of human diseases (e.g. Jelenik 2014 Diabetes). However, despite the many published data, lack of consistency often precludes quantitative comparison among data sets with permeabilized or homogenized muscle fibres or isolated mitochondria, normalized to either tissue wet weight, dry weight, protein content, citrate synthase activity or other mitochondrial markers. In the absence of validated conversion factors, these data remain largely unconnected and can only be qualitatively linked.
- The aim of WG2 will be to provide access to complete data sets for post-study statistical analysis and use harmonization tools (WG1) for standardized documentation, to initiate a data repository on muscle tissue from humans and model organisms in health and disease. Data sets shall be obtained from already published and new studies, prompting participating labs to report experimental details beyond those already published as far as possible (using tools such as PubMed Commons). As a result, specific protocols will be summarized for handling muscle tissue. Depending on specific interests, WG2 may decide to extend their focus to other tissue types.
WG2 Participants
| Country | City | Contact |
|---|---|---|
| Australia | Melbourne | Bishop David J |
| Austria | Innsbruck | Laner Verena |
| Austria | Innsbruck | Gnaiger Erich |
| Austria | Salzburg | Mayr JA |
| Austria | Innsbruck | Doerrier Carolina |
| Belgium | Leuven | Bird Matthew |
| Belgium | Liege | Votion Dominique-Marie |
| Brazil | São Paulo | Ferreira Julio Cesar B |
| Brazil | Jaboticabal, SP | Garcia Geovana S |
| Canada | Rimouski | Blier Pierre U |
| Canada | Vancouver | Boushel Robert C |
| Canada | Edmonton (Alberta) | Lemieux Helene |
| Canada | Rimouski | Vandermeeren E |
| Canada | Antigonish | Kane Daniel A |
| Croatia | Zagreb | Saric A |
| Croatia | Split | Mihanovic I |
| Czech Republic | Prague | Elkalaf Moustafa |
| Czech Republic | Pilsen | Kuncova J |
| Czech Republic | Hradec Králové | Waldauf P |
| Czech Republic | Pilsen | Markova Michaela |
| Czech Republic | Prague 10 | Krajcova Adela |
| Denmark | Copenhagen | Gonzalez-Franquesa Alba |
| Denmark | Malov | Hey-Mogensen M |
| Denmark | Copenhagen | Dela Flemming |
| Denmark | Copenhagen | Larsen Steen |
| Denmark | Copenhagen N | Mortensen OH |
| Denmark | Hvidovre | Nehlin Jan O |
| Estonia | Tallinn | Puurand Marju |
| Estonia | Tallinn | Truu Laura |
| Estonia | Tallinn | Aid-Vanakova Jekaterina |
| Estonia | Tallinn | Karro N |
| Estonia | Tartu | Paju Kalju |
| Estonia | Tallinn | Kaambre Tuuli |
| Estonia | Tallinn | Vendelin Marko |
| Estonia | Tallinn | Tepp Kersti |
| Finland | Helsinki | Pirinen E |
| Finland | Jyvaeskylae | Lehti Maarit |
| France | Grenoble cedex 9 | Dubouchaud Herve |
| France | Bordeaux cedex | Mourier A |
| France | Grenoble Cedex 9 | Schlattner Uwe |
| France | Montpellier | Cortade F |
| France | Montpellier Cedex 1 | Chabi Beatrice |
| France | Paris | Ventura-Clapier R |
| France | Paris | Armand Anne-Sophie |
| France | Paris | Petit Patrice X |
| Germany | Düsseldorf | Granata Cesare |
| Germany | Bremerhaven | Mark Felix Christopher |
| Germany | Duesseldorf | Jelenik T |
| Germany | Duesseldorf | Roden Michael |
| Germany | Leipzig | Ost Mario |
| Germany | Rostock | Haider F |
| Germany | Cologne | Pesta Dominik |
| Germany | Köln | Kimoloi Sammy |
| Germany | Nuthetal | Klaus S |
| Germany | Munich | Jastroch M |
| Germany | Bochum | Platen P |
| Greece | Athens | Trougakos Ioannis P |
| Greece | Heraklion | Tavernarakis Nektarios |
| Greece | Heraklio | Sidiropoulou K |
| India | Haryana | Sharma Vipin |
| Ireland | Sligo | Murphy J |
| Ireland | Dublin | O'Gorman Donal |
| Ireland | Dublin | Porter Richard K |
| Israel | Jerusalem | Saada Reisch Ann |
| Israel | Rishon Le Zion | Hachmo Yafit |
| Israel | Zrifin | Sova Marina |
| Italia | Udine | Salvadego Desy |
| Italy | Milan | De Palma Clara |
| Italy | Pisa | Gastaldelli Amalia |
| Italy | Milan | Giovarelli Matteo |
| Italy | Novara | Reano Simone |
| Italy | Bologna | Genova Maria Luisa |
| Italy | Rome | Scatena Roberto |
| Japan | Sapporo | Shirakawa R |
| Japan | Sapporo | Nambu H |
| Japan | Sapporo | Maekawa S |
| Latvia | Riga | Kuka Janis |
| Latvia | Riga | Liepins Edgars |
| Latvia | Riga | Zvejniece Liga |
| Latvia | Riga | Inashkina I |
| Luxembourg | Strassen | Devaux Yvan |
| Malta | Msida | Vella Joanna |
| Netherlands | BT Amsterdam | Jaspers Richard T |
| Netherlands | Maastricht | Grevendonk L |
| Netherlands | Maastricht | Hoeks Joris |
| Netherlands | Maastricht | Van Polanen N |
| Netherlands | Wageningen | Keijer Jaap |
| Netherlands | Amsterdam | De Goede Paul |
| Niederlande | ER Masstricht | De Wit-Verheggen V |
| Niederlande | ER Masstricht | De Theije C |
| Norway | Tromsoe | Aasum E |
| Norway | Tromsoe | Jansen Kirsten M |
| Norway | Oslo | Nikolic N |
| Norway | Oslo | Rustan AC |
| Norway | Tromsoe | Schots Pauke C |
| Norway | Ullevål | Heiestad Christina |
| Norway | Bergen | Tronstad Karl Johan |
| Norway | Oslo | Lund Jenny |
| Norway | Oslo | Eide L |
| Norway | Oslo | Torp May-Kristin |
| Norway | Tromsoe | Larsen Terje S |
| Poland | Warsaw | Dymkowska Dorota |
| Poland | Lodz | Watala Cezary |
| Poland | Warsaw | Sek Aleksandra |
| Poland | Warsaw | Kampa Rafal Pawel |
| Poland | Lodz | Labieniec-Watala Magdalena |
| Portugal | Coimbra | Carvalho Eugenia |
| Portugal | Porto | Beleza Jorge |
| Portugal | Cantanhede | Martins Joao D |
| Portugal | Cantanhede | Ferreira LL |
| Portugal | Coimbra | Martins Marques T |
| Portugal | Porto | Coxito Pedro |
| Portugal | Porto | Magalhaes Jose |
| Portugal | Coimbra | Pereira Susana P |
| Portugal | Coimbra | Palmeira Carlos |
| Romania | Timisoara | Muntean Danina M |
| Romania | Timisoara | Lighezan R |
| Singapore | Singapore | Hausenloy Derek J |
| Slovakia | Bratislava | Ukropec J |
| Slovakia | Bratislava | Sumbalova Zuzana |
| Slovakia | Bratislava | Ukropcova B |
| Slovakia | Bratislava | Maderova D |
| Slovakia | Bratislava | Nemec Michal |
| Slovenia | Ljubljana | Mars T |
| Slovenia | Ljubljana | Pirkmajer Sergej |
| Slovenia | Ljubljana | Dolinar K |
| South Africa | Smith James | |
| Spain | Barcelona | Zorzano Antonio |
| Spain | Barcelona | Gama Perez Pau |
| Spain | Armilla (Granada) | Acuna-Castroviejo Dario |
| Spain | A Coruña | Blanco FJ |
| Spain | Barcelona | Guitart M |
| Spain | Armilla, Granada | Escames Germaine |
| Spain | Sevilla | Bustos Matilde |
| Spain | Granada | Lopez Garcia Luis Carlos |
| Spain | Barcelona | De la Torre Lara J |
| Spain | Madrid | Moran M |
| Spain | Armilla (Granada) | Fernandez-Ortiz Marisol |
| Spain | Barcelona | Batlle M |
| Spain | Barcelona | Sebastian D |
| Spain | Madrid | Cadenas S |
| Spain | Barcelona | Catalan M |
| Spain | Barcelona | Garcia-Roves Pablo Miguel |
| Sweden | Stockholm | Cardinale Daniele A |
| Sweden | Linköping | Fontes-Oliveira CC |
| Switzerland | Lausanne | Morato Fornaguera L |
| Switzerland | Lausanne | Sandi Carmen |
| Switzerland | Lausanne | Weger M |
| Switzerland | Lausanne | Zalachoras I |
| Switzerland | Lausanne | Gebara E |
| Switzerland | Bern | Nuoffer Jean-Marc |
| The Netherlands | Wageningen | Van der Ende Miranda |
| The Netherlands | BT Amsterdam | Wuest Rob CI |
| Turkey | Ankara | Tuncay Erkan |
| USA | Ann Arbor | Beard Daniel A |
| USA | Norfolk | Lai Nicola |
| USA | Gainesville | Hepple Russell T |
| USA | Chicago | Dayanidhi Sudarshan |
| USA | Fairbanks | O'Brien Kristin |
| USA | Orlando | Distefano Giovanna |
| USA | St Louis | Welch R |
| USA | College Station | Latham C |
| USA | Baltimore | Gonzalez-Freire Marta |
| USA | Gainesville | Neyroud D |
| USA | College Station | White-Springer Sarah H |
| USA | Little Rock | Porter Craig |
| USA | Orlando | Coen Paul M |
| USA | Gainesville | Wohlgemuth Stephanie E |
| USA | Torrance | Rossiter Harry B |
| USA | Fort Collins | Chicco Adam J |
| USA | Baton Rouge | Irving Brian A |
| USA | Boca Raton | Khamoui Andy V |
| USA | Baltimore | Fang Evandro F |
| USA | Colorado Springs | Jacobs RA |
| USA | Baton Rouge | Axelrod Christopher L |
| United Kingdom | Manchester | Giakoumaki I |
| United Kingdom | Birmingham | Joanisse S |
| United Kingdom | Loughborough | Ebanks Brad |
| United Kingdom | Plymouth, Devon | McKenna Helen T |
| United Kingdom | Cambridge | Shiroma Jonathan G |
| United Kingdom | Brighton | Moore Anthony L |
| United Kingdom | London | Szabadkai Gyorgy |
| United Kingdom | Cambridge | Murray Andrew James |
| United Kingdom | Birmingham | Garten Antje |
| United Kingdom | Birmingham | Thakker A |
| United Kingdom | Nottingham | Chakrabarti Lisa |
| United Kingdom | Birmingham | Ashcroft S |
| United Kingdom | Leeds | Boyle JP |
| United Kingdom | Oxford | Makrecka-Kuka Marina |
| United States | Providence | Siamwala J |
WG2 Management
Tasks
- Call for participating labs to deliver relevant experimental data on already published studies and to report them in a standardized format.
- Collection and indexing of the data sets as required for statistical analysis.
- Discussion of procedures, protocols and general guidelines.
- Draft a comprehensive review on mt-function in muscle tissue (registration at PROSPERO, link with EQUATOR).
- Opening of the database to the research public for data search and moderated entry of new data sets.
Milestones
- Call for data report delivered.
- Data sets entered in standardized format.
- Summary, interpretation and discussion of data for review.
Deliverables
- A MITOEAGLE database on muscle tissue from humans and model organisms.
- A set of guidelines for future studies on mitochondrial bioenergetics in muscle tissue.
- Draft of review manuscript.
Projects in progress
- » MiPMap
