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Difference between revisions of "O2k-Publications: Theoretical Background"

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Revision as of 09:25, 14 November 2011

Back to: O2k-Publications

 Was published in yearHas title
MiPNet18.10 O2k-Specifications2024-03-26
Oroboros
O2k-specifications for respirometry and comprehensive OXPHOS analysis.
Gnaiger 2020 BEC MitoPathways2020Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-0002
Residual oxygen consumption2020Gnaiger E (2020) Residual oxygen consumption: a baseline correction of mitochondrial respiration. Mitochondr Physiol Network (2016-01-28) last update 2020-11-11.
P/E control ratio2020Gnaiger E (2020) P/E from mouse to man. Mitochondr Physiol Network (2014-05-20) last update 2020-11-12.
P-L control efficiency2020Gnaiger E (2020) Cell ergometry: OXPHOS-control and ET-coupling efficiency. Mitochondr Physiol Network (2015-01-18) last update 2020-11-12.
E-L coupling efficiency2020Gnaiger E (2020) Biochemical coupling efficiency: from 0 to <1. Mitochondr Physiol Network (2015-01-18) last update 2020-11-12.
Flux control efficiency2020Gnaiger E (2020) Flux control efficiency: normalization of mitochondrial respiration. Mitochondr Physiol Network 2016-03-20; updated 2020-11-10.
Electron transfer pathway2020Gnaiger E (2017) Electron transfer pathway versus electron transport chain. Mitochondr Physiol Network (2010-08-17) last update 2020-06-02.
OXPHOS capacity2020Gnaiger E (2020) OXPHOS P and State 3. Mitochondr Physiol Network (2016-07-15) last update 2020-11-08.
LEAK respiration2019Gnaiger E (2019) LEAK respiration: concept-linked terminology of respiratory states. Mitochondr Physiol Network 2019-01-24.
Electron-transfer-pathway state2019Gnaiger E (2019) ET-pathway states. Mitochondr Physiol Network 2019-06-11 (last edit since 2016-11-08).
Force2018Gnaiger E (2018) Gibbs energy or Gibbs force? Mitochondr Physiol Network 2018-08-07.
ET capacity2017Gnaiger E (2017) Why ET capacity, why not State 3u? Mitochondr Physiol Network (2014-07-06) last update 2020-11-10.
Categories of SUIT protocols2017Gnaiger E (2017) Categories of SUIT protocols and ETS pathway control states. MiPNet 2017-03-12; original 2016-03-20; edited 2016-08-21.
Garlid 2016 Handb Exp Pharmacol2016Garlid AO, Polson JS, Garlid KD, Hermjakob H, Ping P (2016) Equipping physiologists with an informatics tool chest: toward an integerated mitochondrial phenome. Handb Exp Pharmacol 240:377-401.
Coupling-control protocol2015Gnaiger E (2015) From PCP to CCP. Mitochondr Physiol Network 2015-01-11.
Cell ergometry2015Gnaiger E (2015) Cell ergometry and OXPHOS. Mitochondr Physiol Network 2015-01-18.
MiPNet19.20 Cytochrome c control efficiency2014-04-21Cytochrome c control efficiency: a test for outer mt-membrane integrity.
Gnaiger 2014 MitoPathways2014
O2k-Protocols
Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. Oroboros MiPNet Publications, Innsbruck:80 pp. — see 5th edition: Gnaiger 2020 BEC MitoPathways.
Normothermia2014Gnaiger E (2014) Normothermia: from endotherms to ectotherms. Mitochondr Physiol Network 2014-04-18.
Respiratory complexes2014Gnaiger E (2014) Respiratory Complexes - more than five. Mitochondr Physiol Network 2014-07-07.
Noncoupled respiration2014Gnaiger E (2014) Is respiration uncoupled - noncoupled - dyscoupled? Mitochondr Physiol Network 2014-04-18.
Mitochondrial marker2014Gnaiger E (2014) Mitochondrial markers and expression of mitochondrial respiration. Mitochondr Physiol Network 2014-07-26.
Solutions2014Gnaiger E (2014) Stock-, storage- and working-solutions: How do they differ? Mitochondr Physiol Network 2014-04-17.
Iglesias-Gonzalez 2014 PhD Thesis2014Iglesias-Gonzalez J (2014) Neurotoxicity induced by oxidative stress and aluminium in relation to Parkinson’s disease: a mitochondrial bioenergetic approach by high-resolution respirometry. PhD Thesis 1-242.
Basal respiration2013Gnaiger E (2013) Basal respiration in physiology, cellular bioenergetics and mitochondrial physiology. Mitochondr Physiol Network 2013-07-07.
Larsen 2012 Eur J Appl Physiol2012Larsen FJ, Ekblom B (2012) The low intracellular oxygen tension during exercise is a function of limited oxygen supply and high mitochondrial oxygen affinity. Eur J Appl Physiol 112:3935-6.
Palmeira 2012 Methods Mol Biol2012Palmeira CM, Rolo AP (2012) Mitochondrial membrane potential (ΔΨ) fluctuations associated with the metabolic states of mitochondria. Methods Mol Biol 810:89-101.
Mitophagy2012Pesta D (2012) Mitochondrial mitophagy. Mitochondr Physiol Network 2012-05-22.
Figueira 2012 Methods Mol Biol2012Figueira TR, Melo DR, Vercesi AE, Castilho RF (2012) Safranine as a fluorescent probe for the evaluation of mitochondrial membrane potential in isolated organelles and permeabilized cells. Methods Mol Biol 810:103-17.
Sirtuins2012Pesta D (2012) Sirtuin family. Mitochondr Physiol Network 2012-06-29.
Affourtit 2012 Methods Mol Biol2012Affourtit C, Quinlan CL, Brand MD (2012) Measurement of proton leak and electron leak in isolated mitochondria. Methods Mol Biol 810:165-82.
Diapause2012Hand SC (2012) Diapause versus quiescence. Mitochondr Physiol Network 2012-11-21.
Song 2011 Free Radical Biol Med2011Song Y, Buettner GR (2011) Thermodynamic and kinetic considerations for the reaction of semiquinone radicals to form superoxide and hydrogen peroxide. Free Radical Biol Med 919-62.
Chinopoulos 2011 Methods Mol Biol2011Chinopoulos C, Zhang SF, Thomas B, Ten V, Starkov AA (2011) Isolation and functional assessment of mitochondria from small amounts of mouse brain tissue. Methods Mol Biol 793:311-24.
Perevoshchikova 2009 Biochemistry (Mosc)2009Perevoshchikova IV, Sorochkina AI, Zorov DB, Antonenko YN (2009 ) Safranine O as a fluorescent probe for mitochondrial membrane potential studied on the single particle level and in suspension. Biochemistry (Mosc) 74:663-71.
Gnaiger 2009 OCESHS2009Gnaiger E (2009) Open and closed systems: Styles of thinking explain controversies on the 'Negative Entropy' concept of Ludwig Boltzmann and Erwin Schrödinger. Third ICESHS, Austrian Academy of Sciences, Vienna 2008.
Gnaiger 2007 MitoPathways2007
O2k-Protocols
Gnaiger E ed (2007) Mitochondrial pathways and respiratory control. 1st ed. Oroboros MiPNet Publications, Innsbruck:96 pp. ISBN 978-3-9502399-0-4. — see 5th edition: Gnaiger 2020 BEC MitoPathways.
Gnaiger 1994 BTK-621994
BTK1994
Gnaiger E (1994) Negative entropy for living systems: controversy between Nobel Laureates Schrödinger, Pauling and Perutz. In: What is Controlling Life? (Gnaiger E, Gellerich FN, Wyss M, eds) Modern Trends in BioThermoKinetics 3. Innsbruck Univ Press: 62-70.
Gnaiger 1994 BTK-2071994Gnaiger E, Wyss M (1994) Chemical forces in the cell: Calculation for the ATP system. In: What is Controlling Life? (Gnaiger E, Gellerich FN, Wyss M, eds) Modern Trends in BioThermoKinetics 3. Innsbruck Univ Press:207-12.
Gnaiger 1994 BTK1994
BTK1994
Gnaiger E, Gellerich FN, Wyss M (1994) What is controlling life? 50 years after Erwin Schrödinger's What is life? Modern trends in BiothermoKinetics 3, Innsbruck Univ Press:336 pp. ISBN 10: 3901249176, ISBN 13: 9783901249174
Gnaiger 1993 Hypoxia1993Gnaiger E (1993) Efficiency and power strategies under hypoxia. Is low efficiency at high glycolytic ATP production a paradox? In: Surviving hypoxia: Mechanisms of control and adaptation. Hochachka PW, Lutz PL, Sick T, Rosenthal M, Van den Thillart G (eds) CRC Press, Boca Raton, Ann Arbor, London, Tokyo:77-109.
Gnaiger 1993 Pure Appl Chem1993Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. http://dx.doi.org/10.1351/pac199365091983
Von Stockar 1993 Biochim Biophys Acta1993Von Stockar U, Gustafsson L, Larsson C, Marison I, Tissot P, Gnaiger E (1993) Thermodynamic considerations in constructing energy balances for cellular growth. Biochim Biophys Acta 1183:221-40. https://doi.org/10.1016/0005-2728(93)90225-5
Gnaiger 1992 Funct Ecol1992Gnaiger E (1992) Optimum efficiency of energy transformation and the evolution of catabolic pathways. Funct Ecol 6:234-41.
Haller 1990 CYCLOBIOS Kinetics1990Haller T, Gnaiger E (1990) Kinetic control and reaction pressure in steady state coupled mitochondria. CYCLOBIOS Newsletter 4:63-6.
Gnaiger 1990 Biochim Biophys Acta1990Gnaiger E, Kemp RB (1990) Anaerobic metabolism in aerobic mammalian cells: information from the ratio of calorimetric heat flux and respirometric oxygen flux. Biochim Biophys Acta 1016:328-32.
Gnaiger 1990 Thermochim Acta1990Gnaiger E (1990) Concepts on efficiency in biological calorimetry and metabolic flux control. Thermochim Acta 172:31-52. https://doi.org/10.1016/0040-6031(90)80557-F
Rottenberg 1984 J Membr Biol1984Rottenberg H (1984) Membrane potential and surface potential in mitochondria: uptake and binding of lipophilic cations. J Membr Biol 81:127-38.
Gnaiger 1984 Oecologia1984Gnaiger E, Bitterlich G (1984) Proximate biochemical proposition and caloric content calculated from elemental CHN analysis: a stoichiometric concept. Oecologia 62:289-98.
Gnaiger 1983 POS symbols1983Gnaiger E (1983) Symbols and units: toward standardization. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:352-8.
Hitchman 1983 POS Membrane1983Hitchman ML, Gnaiger E (1983) A thermodynamic consideration of permeability coefficients of membranes. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:31-6.
Hitchman 1983 POS Calib1983Hitchman ML (1983) Calibration and accuracy of polarographic oxygen sensors. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York: 18-30.
Forstner 1983 POS1983Forstner H, Gnaiger E (1983) Calculation of equilibrium oxygen concentration. In: Gnaiger E, Forstner H (eds) Polarographic oxygen sensors. Aquatic and physiological applications. Springer, Berlin, Heidelberg, New York:321-33.
Hale 1983 POS Stability1983Hale JM (1983) Factors influencing the stability of polarographic oxygen sensors. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York: 3-17.
Gnaiger 1983 Springer POS1983Gnaiger E, Forstner H, eds (1983) Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Springer, Berlin, Heidelberg, New York:370 pp.
Gnaiger 1983 POS-EnergEquivalents1983Gnaiger E (1983) Calculation of energetic and biochemical equivalents of respiratory oxygen consumption. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:337-45.
Gnaiger 1983 POS-pO21983Gnaiger E (1983) Calculation of pO2 in water equilibrated with a mixture of room air and nitrogen. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:334-6.
Gnaiger 1983 J Exp Zool1983Gnaiger E (1983) Heat dissipation and energetic efficiency in animal anoxibiosis. Economy contra power. J Exp Zool 228:471-90.
Mitchell 1975 FEBS Letters1975Mitchell P (1975) The protonmotive Q cycle: A general formulation. FEBS Lett 59:137-9.