Difference between revisions of "MitoPedia"
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:::: '''High-resolution terminology - matching measurements at high-resolution''' | :::: '''High-resolution terminology - matching measurements at high-resolution''' | ||
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::::'''» [[MitoPedia alert]]''' | |||
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:::: '''» [[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - [[Cohen 2008 IUPAC Green Book |»Bioblast link«]]</ref>,<ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref>,<ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of nonequilibrium thermodynamics | :::: '''» [[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - [[Cohen 2008 IUPAC Green Book |»Bioblast link«]]</ref><sup>,</sup><ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref><sup>,</sup><ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of mitochondrial physiology<ref name="MitoPathways"> Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. Oroboros MiPNet Publications, Innsbruck:80 pp. - [[Gnaiger 2014 MitoPathways |»Bioblast link«]]</ref> and nonequilibrium thermodynamics<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - [[Gnaiger 1993 Pure Appl Chem |»Bioblast link«]]</ref>. | ||
=== MitoPedia: Concepts === | === MitoPedia: Concepts === | ||
::::» [[MitoPedia: Respiratory states]]<ref> | ::::» [[MitoPedia: MiP concepts]] | ||
::::» [[MitoPedia: | ::::» [[MitoPedia: Respiratory states]]<ref name="MitoPathways"/> | ||
::::» [[MitoPedia: Respiratory control ratios]]<ref name="MitoPathways"/> | |||
::::» [[MitoPedia: SUIT]] | |||
::::» [[MitoPedia: Ergodynamics]] | |||
::::» [[MitoFit Quality Control System]] | ::::» [[MitoFit Quality Control System]] | ||
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=== MitoPedia: O2k and high-resolution respirometry === | === MitoPedia: O2k and high-resolution respirometry === | ||
::::» [[O2k-Open_Support#MitoPedia:_O2k-Open_Support |MitoPedia: O2k-Open Support]] | |||
::::» [[MitoPedia: O2k hardware]] | ::::» [[MitoPedia: O2k hardware]] | ||
::::» [[MitoPedia: DatLab]] | ::::» [[MitoPedia: DatLab]] | ||
::::» [[MitoPedia: SUIT | ::::» [[MitoPedia: SUIT]] | ||
=== MitoPedia: MiP and biochemistry === | === MitoPedia: MiP and biochemistry === | ||
::::» [[MitoPedia: Substrates and metabolites]] | ::::» [[MitoPedia: Substrates and metabolites]] | ||
::::» [[MitoPedia: Uncouplers]] | ::::» [[MitoPedia: Uncouplers]] | ||
::::» [[MitoPedia: Inhibitors]] | ::::» [[MitoPedia: Inhibitors]] | ||
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::::» [[MitoPedia: Media for respirometry]] | ::::» [[MitoPedia: Media for respirometry]] | ||
::::» [[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access«]</ref> | ::::» [[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access«]</ref> | ||
=== MitoPedia: Preprints and history === | |||
::::» [[MitoPedia: Preprints]] - '''''New:''''' 2019-02-19 | |||
::::» [[Mitochondria and bioblasts: Made history]] | ::::» [[Mitochondria and bioblasts: Made history]] | ||
=== MitoPedia: Oroboros Ecosystem === | |||
::::» [[O2k-Protocols]] | |||
::::» [[O2k-Publications: Topics]] | |||
=== MitoPedia: Links === | === MitoPedia: Links === | ||
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::::» [[MitoGlobal Societies |Mitochondrial Global Network: List of MitoGlobal Societies]] | ::::» [[MitoGlobal Societies |Mitochondrial Global Network: List of MitoGlobal Societies]] | ||
[[Image:MitoPedia.jpg|left|80px|link=http://www.bioblast.at/index.php/MitoPedia |MitoPedia]] | [[Image:MitoPedia.jpg|left|80px|link=http://www.bioblast.at/index.php/MitoPedia |MitoPedia]] | ||
[[Image:BB-Bioblast.jpg| | |||
[[Image:BB-Bioblast.jpg|left|80px|link=http://www.bioblast.at/index.php/Bioblast:About |Bioblast wiki]] | |||
== MitoPedia and Bioblast == | == MitoPedia and Bioblast == | ||
:::: The term '''MitoPedia''' expresses the link to [https://www.wikipedia.org/ '''Wikipedia''']. We use the [http://www.mediawiki.org/wiki/MediaWiki MediaWiki] software for generating a bottom-up database and glossaries. The 'Bioblast community' of mitochondrial experts is cordially invited to active participation - a vision that may develop further in the future. To make this possible, the | :::: The term '''MitoPedia''' expresses the link to [https://www.wikipedia.org/ '''Wikipedia''']. We use the [http://www.mediawiki.org/wiki/MediaWiki MediaWiki] software for generating a bottom-up database and glossaries. The 'Bioblast community' of mitochondrial experts is cordially invited to active participation - a vision that may develop further in the future. To make this possible, the Oroboros-team continues to work on the '''Bioblast''' website as an ''information synthase'' - in the spirit of [[Gentle Science]] and as a branch of the [[Oroboros Ecosystem]]. ~ [[Gnaiger_E|Gnaiger Erich]] 09:20, 18 May 2014 (CEST) | ||
[[File:EPL-free and excess.jpg|right|300px | [[File:EPL-free and excess.jpg|thumb|right|300px|[[Gnaiger 2014 MitoPathways |The Blue Book 2014: Fig. 2.4.]]]] | ||
Revision as of 10:27, 13 February 2020
- Development of a consistent nomenclature in mitochondrial physiology, in the spirit of Gentle Science
- High-resolution terminology - matching measurements at high-resolution
MitoPedia: Concepts
MitoPedia: Methods
MitoPedia: O2k and high-resolution respirometry
MitoPedia: MiP and biochemistry
MitoPedia: Preprints and history
- » MitoPedia: Preprints - New: 2019-02-19
- » Mitochondria and bioblasts: Made history
MitoPedia: Oroboros Ecosystem
MitoPedia: Links
MitoPedia and Bioblast
- The term MitoPedia expresses the link to Wikipedia. We use the MediaWiki software for generating a bottom-up database and glossaries. The 'Bioblast community' of mitochondrial experts is cordially invited to active participation - a vision that may develop further in the future. To make this possible, the Oroboros-team continues to work on the Bioblast website as an information synthase - in the spirit of Gentle Science and as a branch of the Oroboros Ecosystem. ~ Gnaiger Erich 09:20, 18 May 2014 (CEST)
MitoPedia - high-resolution terminology, matching measurements at high-resolution
MitoPedia term: Dihydro-orotate dehydrogenase - another respiratory Complex at the Q-junction.
» Respiratory control ratios beyond the RCR - coupling:
» HRR - high-resolution respirometry was established in 1995. This is the first comprehensive methodological summary: Control of mitochondrial and cellular respiration by oxygen. J Bioenerg Biomembr (1995)
References
- ↑ Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - »Bioblast link«
- ↑ International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - »Open Access«
- ↑ International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - »Open Access«
- ↑ 4.0 4.1 4.2 Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. Oroboros MiPNet Publications, Innsbruck:80 pp. - »Bioblast link«
- ↑ Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - »Bioblast link«
- ↑ International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - »Open Access«