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From Bioblast
 YearReferenceCouplingPathwayPreparationOrganismTissue;cell
Ambrosio 2014 Free Radic Biol Med2014Ambrosio F, Brown E, Stolz D, Ferrari R, Goodpaster BH, Deasy B, Distefano G, Roperti A, Cheikhi A, Garciafigueroa Y, Barchowsky A (2014) Arsenic induces sustained impairment of skeletal muscle and muscle progenitor cell ultrastructure and bioenergetics. Free Radic Biol Med 74C:64-73.LEAK
OXPHOS
ET		F
N
NS		Permeabilized tissueMouseSkeletal muscle
Cavalcanti-de-Albuquerque 2014 J Appl Physiol2014Cavalcanti-de-Albuquerque JP, Salvador IC, Martins EL, Jardim-Messeder D, Werneck-de-Castro JP, Galina A, Carvalho DP (2014) Role of estrogen on skeletal muscle mitochondrial function in ovariectomized rats: a time course study in different fiber types. J Appl Physiol 116:779-89.LEAK
OXPHOS		F
N
Gp
NS
ROX		Permeabilized tissueRatSkeletal muscle
Koenemann 2014 Dissertation2014Koenemann B (2014) Einfluss der Hyperglykämie auf die mitochondriale Atmung von Leberzellen septischer Mäuse mit und ohne Imeglimin. PhD Thesis 1-61.LEAK
OXPHOS
ET		F
N
S
NS
Other combinations
ROX		HomogenateMouseLiver
Van Bree 2014 PhD Thesis2014van Bree B (2014) Mitochondria, lipotoxicity and skeletal muscle metabolism: implications for type 2 diabetes mellitus. PhD Thesis 1-150.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseSkeletal muscle
Williams 2014 PLoS One2014Williams CB, Hughes MC, Edgett BA, Scribbans TD, Simpson CA, Perry CG, Gurd BJ (2014) An examination of resveratrol's mechanisms of action in human tissue: impact of a single dose in vivo and dose responses in skeletal muscle ex vivo. PLoS One 9:e102406.OXPHOSF
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Divakaruni 2014 Curr Protoc Toxicol2014Divakaruni AS, Rogers GW, Murphy AN (2014) Measuring mitochondrial function in permeabilized cells using the Seahorse XF Analyzer or a clark-type oxygen electrode. Curr Protoc Toxicol 60:25.2.1-25.2.16.LEAK
OXPHOS
ET		F
N
S
Gp
CIV
ROX		Permeabilized cellsMouseSkeletal muscle
Other cell lines
Chicco 2014 J Exp Biol2014Chicco AJ, Le CH, Schlater AE, Nguyen AD, Kaye SD, Beals JW, Scalzo RL, Bell C, Gnaiger E, Costa DP, Crocker DE, Kanatous SB (2014) High fatty acid oxidation capacity and phosphorylation control despite elevated leak and reduced respiratory capacity in northern elephant seal muscle mitochondria. J Exp Biol 217:2947-55.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHuman
Other mammals		Skeletal muscle
Ludzki 2014 Thesis2014Ludzki AC (2014) Palmitoyl-CoA inhibition of mitochondrial ADP sensitivity is attenuated by exercise training in human skeletal muscle. Master's Thesis 1-86.LEAK
OXPHOS		F
N
S
Gp
NS		Permeabilized tissueHuman
Mouse		Skeletal muscle
Boushel 2014 Acta Physiol (Oxf)2014Boushel RC, Ara I, Gnaiger E, Helge JW, Gonzalez-Alonzo J, Munck-Andersen T, Sondergaard H, Damsgaard R, van Hall G, Saltin B, Calbet JA (2014) Low intensity training increases peak arm VO2 by enhancing both convective and diffusive O2 delivery. Acta Physiol (Oxf) 211:122-34.LEAK
OXPHOS		F
N
NS		Permeabilized tissueHumanSkeletal muscle
Abdurrachim 2014 Biochim Biophys Acta2014Abdurrachim D, Ciapaite J, Wessels B, Nabben M, Luiken JJ, Nicolay K, Prompers JJ (2014) Cardiac diastolic dysfunction in high-fat diet fed mice is associated with lipotoxicity without impairment of cardiac energetics in vivo. Biochim Biophys Acta 1842:1525-37.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseHeart
Cahova 2014 Appl Physiol Nutr Metab2014Cahova M, Chrastina P, Hansikova H, Drahota Z, Trnovska J, Skop V, Spacilova J, Malinska HOliyarnyk O, Papackova Z, Palenickova E,Kazdova L (2014) Carnitine supplementation alleviates lipid metabolism derangements and protects against oxidative stress in non-obese hereditary hypertriglyceridemic rats. Appl Physiol Nutr Metab 40:280-91.OXPHOSF
N
S		Isolated mitochondriaRatLiver
Ryan 2014 J Physiol2014Ryan TE, Brophy P, Lin CT, Hickner RC, Neufer PD (2014) Assessment of in vivo skeletal muscle mitochondrial respiratory capacity in humans by near-infrared spectroscopy: a comparison with in situ measurements. J Physiol 592:3231-41.LEAK
OXPHOS		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Worth 2014 J Biol Chem2014Worth AJ, Basu SS, Snyder NW, Mesaros C, Blair IA (2014) Inhibition of neuronal cell mitochondrial complex I with rotenone increases lipid β-oxidation, supporting acetyl-coenzyme A levels. J Biol Chem 289:26895-903. doi: 10.1074/jbc.M114.591354FIntact cellsNervous system
Casanova 2014 J Nutr Biochem2014Casanova E, Baselga-Escudero L, Ribas-Latre A, Cedó L, Arola-Arnal A, Pinent M, Bladé C, Arola L, Salvadó MJ (2014) Chronic intake of proanthocyanidins and docosahexaenoic acid improves skeletal muscle oxidative capacity in diet-obese rats. J Nutr Biochem 25:1003–10.LEAK
OXPHOS
ET		F
N
S
NS		Isolated mitochondriaRatSkeletal muscle
Robach 2014 Med Sci Sports Exerc2014Robach P, Bonne T, Flück D, Bürgi S, Toigo M, Jacobs R, Lundby C (2014) Hypoxic training: effect on mitochondrial function and aerobic performance in hypoxia. Med Sci Sports Exerc 46:1936-45.FPermeabilized tissueHumanSkeletal muscle
Kivelae 2014 EMBO Mol Med2014Kivelä R, Bry M, Robciuc MR, Räsänen M, Taavitsainen M, Silvola JM, Saraste A, Hulmi JJ, Anisimov A, Mäyränpää MI, Lindeman JH, Eklund L, Hellberg S, Hlushchuk R, Zhuang ZW, Simons M, Djonov V, Knuuti J, Mervaala E, Alitalo K (2016) VEGF-B-induced vascular growth leads to metabolic reprogramming and ischemia resistance in the heart. EMBO Mol Med 6:307-21.LEAK
OXPHOS
ET		F
N
S
NS		HomogenateRatHeart
Cedikova 2014 Evid Based Complement Alternat Med2014Cedikova M, Miklikova M, Stachova L, Grundmanova M, Tuma Z, Vetvicka V, Zech N, Kralickova M, Kuncova J (2014) Effects of the Czech propolis on sperm mitochondrial function. Evid Based Complement Alternat Med 248768.LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized cellsHumanGenital
Rauchova 2014 Int J Biochem Cell Biol2014Rauchová H, Vokurková M, Drahota Z (2014) Inhibition of mitochondrial glycerol-3-phosphate dehydrogenase by α-tocopheryl succinate. Int J Biochem Cell Biol 53:409-13.F
S		Isolated mitochondriaRat
Other mammals		Fat
Khrameeva 2014 Nat Commun2014Khrameeva EE, Bozek K, He L, Yan Z, Jiang X, Wei Y, Tang K, Gelfand MS, Prufer K, Kelso J, Pääbo S, Giavalisco P, Lachmann M, Khaitovich P (2014) Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nat Commun 5:3584. doi: 10.1038/ncomms4584FHuman
Littlejohns 2014 PLoS One2014Littlejohns B, Pasdois P, Duggan S, Bond AR, Heesom K, Jackson CL, Angelini GD, Halestrap AP, Suleiman MS (2014) Hearts from mice fed a non-obesogenic high-fat diet exhibit changes in their oxidative state, calcium and mitochondria in parallel with increased susceptibility to reperfusion injury. PLoS One 9:e100579.LEAK
OXPHOS		F
N		Isolated mitochondriaMouseHeart
Gnaiger 2014 MitoPathways2014
O2k-Protocols

Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. Oroboros MiPNet Publications, Innsbruck:80 pp. — see 5th edition: Gnaiger 2020 BEC MitoPathways.

LEAK
ROUTINE
OXPHOS
ET		F
N
S
Gp
CIV
NS
ROX		Permeabilized cells
Permeabilized tissue
Homogenate
Isolated mitochondria
Intact cells		Human
Mouse		Heart
Skeletal muscle
Fibroblast
Montaigne 2014 Circulation2014Montaigne D, Marechal X, Coisne A, Debry N, Modine T, Fayad G, Potelle C, El Arid JM, Mouton S, Sebti Y, Duez H, Preau S, Remy-Jouet I, Zerimech F, Koussa M, Richard V, Neviere R, Edme JL, Lefebvre P, Staels B (2014) Myocardial contractile dysfunction is associated with impaired mitochondrial function and dynamics in Type 2 Diabetic but not in obese patients. Circulation 130:554-64.LEAK
OXPHOS
ET		F
N
S
CIV
NS		Permeabilized tissueHumanHeart
Kancirova 2014 Cardiovascular Research Supplements2014Kancirova I, Jasova M, Murarikova M, Carnicka S, Sumbalova Z, Ulicna O, Vancova O, Waczulikova I. Ziegelhoffer A, Ferko M (2014) Adaptive changes of rat heart mitochondrial respiration: response of remote ischemic preconditioning. Cardiovascular Research Supplements 103:57–94.OXPHOSF
N		Isolated mitochondriaRatHeart
Jacobs 2013 J Gerontol A Biol Sci Med Sci2013Jacobs R, Diaz V, Soldini L, Haider T, Thomassen M, Nordsborg NB, Gassmann M, Lundby C (2013) Fast-twitch glycolytic skeletal muscle is predisposed to age-induced impairments in mitochondrial function. J Gerontol A Biol Sci Med Sci 68:1010-22.LEAK
OXPHOS
ET		F
N
S
NS
ROX		Permeabilized tissueMouseSkeletal muscle
Ka 2013 Physiol Genomics2013Ka S, Markljung E, Ring H, Albert FW, Harun-Or-Rashid M, Wahlberg P, Garcia-Roves PM, Zierath JR, Denbow DM, Pääbo S, Siegel PB, Andersson L, Hallböök F (2013) Expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight. Physiol Genomics 45:367-76. doi: 10.1152/physiolgenomics.00078.2012FEnzymeChickenSkeletal muscle
Nervous system
Liver
Fat
Roy 2013 PLoS One2013Roy C, Paglialunga S, Schaart G, Moonen-Kornips E, Meex RC, Phielix E, Hoeks J, Hesselink MK, Cianflone K, Schrauwen P (2013) Relationship of C5L2 receptor to skeletal muscle substrate utilization. PLoS One 8:e57494.F
N
S		Isolated mitochondriaHuman
Mouse		Skeletal muscle
Jaburek 2013 Int J Biochem Cell Biol2013Jabůrek M, Ježek J, Zelenka J, Ježek P (2013) Antioxidant activity by a synergy of redox-sensitive mitochondrial phospholipase A2 and uncoupling protein-2 in lung and spleen. Int J Biochem Cell Biol 45:816-25.F
S		Isolated mitochondriaMouse
Cavallo 2013 PLoS One2013Cavallo A, Priore P, Gnoni GV, Papa S, Zanotti F, Gnoni A (2013) 3,5-Diiodo-L-thyronine administration to hypothyroid rats rapidly enhances fatty acid oxidation rate and bioenergetic parameters in liver cells. PLoS One 8:e52328. doi: 10.1371/journal.pone.0052328LEAK
OXPHOS
ET		F
S
NS		Isolated mitochondriaRatLiver
Wohlwend 2013 Thesis2013Wohlwend M (2013) Mitochondrial function in health and disease - high-resolution respirometry in rats inbred for high vs. low running capacity. Thesis Norwegian University of Science and Technology - Trondheim: 44pp.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueRatHeart
Skeletal muscle
Kiebish 2013 J Lipid Res2013Kiebish MA, Yang K, Liu X, Mancuso DJ, Guan S, Zhao Z, Sims HF, Cerqua R, Cade WT, Han X, Gross RW (2013) Dysfunctional cardiac mitochondrial bioenergetic, lipidomic, and signaling in a murine model of Barth syndrome. J Lipid Res 54:1312-25.LEAK
OXPHOS		F
N
S
NS		Isolated mitochondriaMouseHeart
Felser 2013 Toxicol Sci2013Felser A, Blum K, Lindinger PW, Bouitbir J, Kraehenbuehl S (2013) Mechanisms of hepatocellular toxicity associated with dronedarone - a comparison to amiodarone. Toxicol Sci 131:480-90.F
N
S		Isolated mitochondriaHuman
Rat		Liver
Jacobs 2013 J Appl Physiol2013Jacobs R, Flück D, Bonne TC, Bürgi S, Christensen PM, Toigo M, Lundby C (2013) Improvements in exercise performance 1 with high-intensity interval training 2 coincide with an increase in skeletal muscle mitochondrial content and function. J Appl Physiol 115:785-93.LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized tissueHumanSkeletal muscle
Wone 2013 Comp Biochem Physiol A Mol Integr Physiol2013Wone BW, Donovan ER, Cushman JC, Hayes JP (2013) Metabolic rates associated with membrane fatty acids in mice selected for increased maximal metabolic rate. Comp Biochem Physiol A Mol Integr Physiol 165:70-8.FMouse
Perevoshchikova 2013 Free Radic Biol Med2013Perevoshchikova IV, Quinlan CL, Orr AL, Gerencser AA, Brand MD (2013) Sites of superoxide and hydrogen peroxide production during fatty acid oxidation in rat skeletal muscle mitochondria. Free Radic Biol Med 61:298-309. doi: 10.1016/j.freeradbiomed.2013.04.006LEAK
OXPHOS
ET		F
S		Isolated mitochondriaRatSkeletal muscle
Jacobs 2013 Am J Physiol Endocrinol Metab2013Jacobs R, Meinild AK, Nordsborg NB, Lundby C (2013) Lactate oxidation in human skeletal muscle mitochondria. Am J Physiol Endocrinol Metab 304:686-94.LEAK
OXPHOS		F
N
S
NS
ROX		Permeabilized tissueHumanSkeletal muscle
Lanza 2013 Am J Physiol Endocrinol Metab2013Lanza IR, Blachnio-Zabielska A, Johnson ML, Schimke JM, Jakaitis DR, Lebrasseur NK, Jensen MD, Sreekumaran Nair K, Zabielski P (2013) Influence of fish oil on skeletal muscle mitochondrial energetics and lipid metabolites during high-fat diet. Am J Physiol Endocrinol Metab 304:E1391-403.LEAK
OXPHOS		F
N
S
NS
ROX		Isolated mitochondriaMouseSkeletal muscle
Van Eunen 2013 PLoS Comput Biol2013van Eunen K, Simons SM, Gerding A, Bleeker A, den Besten G, Touw CM, Houten SM, Groen BK, Krab K, Reijngoud DJ, Bakker BM (2013) Biochemical competition makes fatty-acid β-oxidation vulnerable to substrate overload. PLoS Comput Biol 9:e1003186.ETF
N		Isolated mitochondriaRatLiver
Jacobs 2013 Exp Physiol2013Jacobs R, Boushel RC, Wright-Paradis C, Calbet JA, Robach P, Gnaiger E, Lundby C (2013) Mitochondrial function in human skeletal muscle following high altitude exposure. Exp Physiol 98:245-55.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Yin 2013 Cell Metab2013Yin H, Pasut A, Soleimani VD, Bentzinger CF, Antoun G, Thorn S, Seale P, Fernando P, van Ijcken W, Grosveld F, Dekemp RA, Boushel RC, Harper ME, Rudnicki MA (2013) MicroRNA-133 controls brown adipose determination in skeletal muscle satellite cells by targeting Prdm16. Cell Metab 17:210-24.FPermeabilized tissue
Intact cells		MouseSkeletal muscle
Fat
Larsen 2012 J Physiol2012Larsen S, Nielsen J, Neigaard Nielsen C, Nielsen LB, Wibrand F, Stride N, Schroder HD, Boushel RC, Helge JW, Dela F, Hey-Mogensen M (2012) Biomarkers of mitochondrial content in skeletal muscle of healthy young human subjects. J Physiol 590:3349-60.LEAK
OXPHOS
ET		F
N
S
CIV
NS		Permeabilized tissueHumanSkeletal muscle
Stephenson 2012 J Appl Physiol (1985)2012Stephenson EJ, Stepto NK, Koch LG, Britton SL, Hawley JA (2012) Divergent skeletal muscle respiratory capacities in rats artificially selected for high and low running ability: a role for Nor1? J Appl Physiol (1985) 113:1403-12.LEAK
OXPHOS
ET		F
N
S
CIV
NS
Other combinations
ROX		Permeabilized tissueRatSkeletal muscle
Rosca 2012 Diabetes2012Rosca MG, Vazquez EJ, Chen Q, Kerner J, Kern TS, Hoppel CL (2012) Oxidation of fatty acids is the source of increased mitochondrial reactive oxygen species production in kidney cortical tubules in early diabetes. Diabetes 61:2074-83. https://doi.org/10.2337/db11-1437F
Kwak 2012 Free Radic Biol Med2012Kwak HB, Thalacker-Mercer A, Anderson EJ, Lin CT, Kane DA, Lee NS, Cortright RN, Bamman MM, Neufer PD (2012) Simvastatin impairs ADP-stimulated respiration and increases mitochondrial oxidative stress in primary human skeletal myotubes. Free Radic Biol Med 52:198-207.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized cells
Intact cells		HumanSkeletal muscle
Other cell lines
Pesta 2012 Methods Mol Biol2012Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_3LEAK
ROUTINE
OXPHOS
ET		F
N
S
NS
ROX		Permeabilized cells
Permeabilized tissue
Intact cells		HumanSkeletal muscle
Other cell lines
HEK
Fibroblast
HUVEC
Lou 2012 Cardiovasc Res2012Lou PH, Zhang L, Lucchinetti E, Heck M, Affolter A, Gandhi M, Kienesberger PC, Hersberger M, Clanachan AS, Zaugg M (2012) Infarct-remodeled hearts with limited oxidative capacity boost fatty acid oxidation after conditioning against ischemia/reperfusion injury. Cardiovasc Res 97:251-61.OXPHOSF
N
S
NS		Permeabilized tissueRatHeart
Stride 2012 Front Physiol2012Stride N, Larsen S, Treebak JT, Hansen CN, Hey-Mogensen M, Speerschneider T, Jensen TE, Jeppesen J, Wojtaszewski JF, Richter EA, Køber L, Dela F (2012) 5'-AMP activated protein kinase is involved in the regulation of myocardial β-oxidative capacity in mice. Front Physiol 3:33.OXPHOSFPermeabilized tissueMouseHeart
Joergensen 2012 Am J Physiol Endocrinol Metab2012Jørgensen W, Jelnes P, Rud KA, Hansen LL, Grunnet N, Quistorff B (2012) Progression of type 2 diabetes in GK rats affects muscle and liver mitochondria differently: pronounced reduction of Complex II flux is observed in liver only. Am J Physiol Endocrinol Metab 303:E515-23.LEAK
OXPHOS		F
S
Other combinations		RatSkeletal muscle
Liver
Hoeks 2012 J Cell Physiol2012Hoeks J, Arany Z, Phielix E, Moonen-Kornips E, Hesselink MK, Schrauwen P (2012) Enhanced lipid -but not carbohydrate- supported mitochondrial respiration in skeletal muscle of PGC-1α overexpressing mice. J Cell Physiol 227:1026-33.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseSkeletal muscle
Picard 2012 Am J Respir Crit Care Med2012Picard M, Jung B, Liang F, Azuelos I, Hussain S, Goldberg P, Godin R, Danialou G, Chaturvedi R, Rygiel K, Matecki S, Jaber S, Des Rosiers C, Karpati G, Ferri L, Burelle Y, Turnbull DM, Taivassalo T, Petrof BJ (2012) Mitochondrial dysfunction and lipid accumulation in the human diaphragm during mechanical ventilation. Am J Respir Crit Care Med 186:1140-9. https://doi.org/10.1164/rccm.201206-0982OCF
Pajuelo-Reguera 2011 Br J Nutr2011Pajuelo-Reguera D, Quesada H, Díaz S, Fernández-Iglesias A, Arola-Arnal A, Bladé C, Salvadó J, Arola L (2011) Chronic dietary supplementation of proanthocyanidins corrects the mitochondrial dysfunction of brown adipose tissue caused by diet-induced obesity in Wistar rats. Br J Nutr 28:1-9.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaRatFat
Pesta 2011 Am J Physiol Regul Integr Comp Physiol2011Pesta D, Hoppel F, Macek C, Messner H, Faulhaber M, Kobel C, Parson W, Burtscher M, Schocke M, Gnaiger E (2011) Similar qualitative and quantitative changes of mitochondrial respiration following strength and endurance training in normoxia and hypoxia in sedentary humans. Am J Physiol Regul Integr Comp Physiol 301:R1078–87.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Lemieux 2011 Int J Biochem Cell Biol2011Lemieux H, Semsroth S, Antretter H, Höfer D, Gnaiger E (2011) Mitochondrial respiratory control and early defects of oxidative phosphorylation in the failing human heart. Int J Biochem Cell Biol 43:1729–38. https://doi.org/10.1016/j.biocel.2011.08.008LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized tissueHumanHeart
Begriche 2011 J Hepatol2011Begriche K, Massart J, Robin MA, Borgne-Sanchez A, Fromenty B (2011) Drug-induced toxicity on mitochondria and lipid metabolism: mechanistic diversity and deleterious consequences for the liver. J Hepatol 54:773-94. https://doi.org/10.1016/j.jhep.2010.11.006F
Goetzman 2011 Prog Mol Biol Transl Sci2011Goetzman ES (2011) Modeling disorders of fatty acid metabolism in the mouse. Prog Mol Biol Transl Sci 100:389-417. https://doi.org/10.1016/B978-0-12-384878-9.00010-8FMouse
Pike 2011 Biochim Biophys Acta2011Pike LS, Smift AL, Croteau NJ, Ferrick DA, Wu M (2011) Inhibition of fatty acid oxidation by etomoxir impairs NADPH production and increases reactive oxygen species resulting in ATP depletion and cell death in human glioblastoma cells. https://doi.org/10.1016/j.bbabio.2010.10.022ROUTINEFIntact cellsOther cell lines
Boyle 2011 Int J Obes2011Boyle KE, Zheng D, Anderson EJ, Neufer PD, Houmard JA (2011) Mitochondrial lipid oxidation is impaired in cultured myotubes from obese humans. Int J Obes 36:1025-31.FPermeabilized cellsHumanSkeletal muscle
Witkowski 2011 J Biol Chem2011Witkowski A, Thweatt J, Smith S (2011) Mammalian ACSF3 protein is a malonyl-CoA synthetase that supplies the chain extender units for mitochondrial fatty acid synthesis. J Biol Chem 286:33729-36.FIsolated mitochondriaHumanHEK
Jacobs 2011 J Appl Physiol2011Jacobs R, Rasmussen P, Siebenmann C, Díaz V, Pesta D, Gnaiger E, Nordsborg NB, Robach P, Lundby C (2011) Determinants of time trial performance and maximal incremental exercise in highly trained endurance athletes. J Appl Physiol 111:1422–30.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Timmers 2011 Cell Metab2011Timmers S, Konings E, Bilet L, Houtkooper RH, van de Weijer T, Goossens GH, Hoeks J, van der Krieken S, Ryu D, Kersten S, Moonen-Kornips E, Hesselink MK, Kunz I, Schrauwen-Hinderling VB, Blaak EE, Auwerx J, Schrauwen P (2011) Calorie restriction-like effects of 30 days of resveratrol supplementation on energy metabolism and metabolic profile in obese humans. Cell Metab 14:612-22.LEAK
OXPHOS
ET		F
N
NS
Other combinations
ROX		Permeabilized tissueHumanSkeletal muscle
Houten 2010 J Inherit Metab Dis2010Houten SM, Wanders RJ (2010) A general introduction to the biochemistry of mitochondrial fatty acid β-oxidation. J Inherit Metab Dis 33:469-77.FEnzymeHuman
Hoeks 2010 Diabetes2010Hoeks J, van Herpen NA, Mensink M, Moonen-Kornips E, van Beurden D, Hesselink MK, Schrauwen P (2010) Prolonged fasting identifies skeletal muscle mitochondrial dysfunction as consequence rather than cause of human insulin resistance. Diabetes 59:2117-25.LEAK
OXPHOS
ET		F
N
NS
Other combinations		Permeabilized tissueHumanSkeletal muscle
Wang 2010 J Biol Chem2010Wang Y, Mohsen AW, Mihalik SJ, Goetzman ES, Vockley J (2010) Evidence for physical association of mitochondrial fatty acid oxidation and oxidative phosphorylation complexes. J Biol Chem 285:29834-41. https://doi.org/10.1074/jbc.M110.139493FIsolated mitochondriaRatLiver
Remels 2010 Mol Cell Endocrinol2010Remels AH, Langen RC, Schrauwen P, Schaart G, Schols AM, Gosker HR (2010) Regulation of mitochondrial biogenesis during myogenesis. Mol Cell Endocrinol 315:113-20.ROUTINE
OXPHOS
ET		FPermeabilized cellsMouse
Rat		Skeletal muscle
Other cell lines
Watmough 2010 Biochim Biophys Acta2010Watmough NJ, Frerman FE (2010) The electron transfer flavoprotein: ubiquinone oxidoreductases. Biochim Biophys Acta 1797:1910-6. https://doi.org/10.1016/j.bbabio.2010.10.007F
Henique 2010 J Biol Chem2010Henique C, Mansouri A, Fumey G, Lenoir V, Girard J, Bouillaud F, Prip-Buus C, Cohen I (2010) Increased mitochondrial fatty acid oxidation is sufficient to protect skeletal muscle cells from palmitate-induced apoptosis. J Biol Chem 285:36818-27.FIntact cellsMouseSkeletal muscle
Other cell lines
Kwon 2009 Thesis2009Kwon OS (2009) Effect of acute exercise or fasting on mitochondrial function and high fat diet-induced insulin resistance. PhD Thesis 46.LEAK
OXPHOS
ET		F
N
NS		Permeabilized tissueRatSkeletal muscle
Flamment 2009 Am J Physiol Endocrinol Metab2009Flamment M, Gueguen N, Wetterwald C, Simard G, Malthièry Y, Ducluzeau PH (2009) Effects of the cannabinoid CB1 antagonist rimonabant on hepatic mitochondrial function in rats fed a high-fat diet. Am J Physiol Endocrinol Metab 297:E1162-70.LEAK
OXPHOS
ET		F
N
S
CIV		Isolated mitochondriaRatLiver
Tahara 2009 Free Radic Biol Med2009Tahara EB, Navarete FD, Kowaltowski AJ (2009) Tissue-, substrate-, and site-specific characteristics of mitochondrial reactive oxygen species generation. Free Radic Biol Med 46:1283-97.LEAK
ET
OXPHOS		F
N
NS
ROX
S
Gp		Isolated mitochondriaRatHeart
Skeletal muscle
Nervous system
Liver
Kidney
Hoeks 2008 FEBS Lett2008Hoeks J, Briedé JJ, de Vogel J, Schaart G, Nabben M, Moonen-Kornips E, Hesselink MK, Schrauwen P (2008) Mitochondrial function, content and ROS production in rat skeletal muscle: Effect of high-fat feeding. FEBS Lett 582:510-16.ROUTINE
OXPHOS
ET		F
NS
ROX		Isolated mitochondriaRatSkeletal muscle
Giulivi 2008 Biochem J2008Giulivi C, Ross-Inta C, Horton AA, Luckhart S (2008) Metabolic pathways in Anopheles stephensi mitochondria. Biochem J 415:309-16.LEAK
OXPHOS		F
N
S
Gp
CIV
Other combinations
ROX		Isolated mitochondriaHuman
Rat
Birds
Hexapods		Skeletal muscle
Cervinkova 2008 Physiol Res2008Cervinková Z, Rauchová H, Kriváková P, Drahota Z (2008) Inhibition of palmityl carnitine oxidation in rat liver mitochondria by tert-butyl hydroperoxide. Physiol Res 57:133-6.F
N
S		Isolated mitochondriaLiver
Gnaiger 2007 MitoPathways2007
O2k-Protocols

Gnaiger E ed (2007) Mitochondrial pathways and respiratory control. 1st ed. Oroboros MiPNet Publications, Innsbruck:96 pp. ISBN 978-3-9502399-0-4. — see 5th edition: Gnaiger 2020 BEC MitoPathways.

F
N
S
Gp
NS
Wall 2006 Am J Physiol Heart Circ Physiol2006Wall JA, Wei J, Ly M, Belmont P, Martindale JJ, Tran D, Sun J, Chen WJ, Yu W, Oeller P, Briggs S, Gustafsson AB, Sayen MR, Gottlieb RA, Glembotski CC (2006) Alterations in oxidative phosphorylation complex proteins in the hearts of transgenic mice that overexpress the p38 MAP kinase activator, MAP kinase kinase 6. Am J Physiol Heart Circ Physiol 291:H2462-72. https://doi.org/10.1152/ajpheart.01311.2005F
S
Toleikis 2005 Biosci Rep2005Toleikis A, Trumbeckaite S, Majiene D (2005) Cytochrome C effect on respiration of heart mitochondria: influence of various factors. Biosci Rep 25:387-97.LEAK
OXPHOS
ET		F
N
S		Permeabilized tissue
Isolated mitochondria		Human
Rat
Rabbit		Heart
Ponsot 2005 J Cell Physiol2005Ponsot E, Zoll J, N'guessan B, Ribera F, Lampert E, Richard R, Veksler V, Ventura-Clapier R, Mettauer B (2005) Mitochondrial tissue specificity of substrates utilization in rat cardiac and skeletal muscles. J Cell Physiol 203:479-86.OXPHOSF
N
Gp		Permeabilized tissueRatHeart
Skeletal muscle
Toogood 2004 J Biol Chem2004Toogood HS, van Thiel A, Basran J, Sutcliffe MJ, Scrutton NS, Leys D (2004) Extensive domain motion and electron transfer in the human electron transferring flavoprotein.medium chain Acyl-CoA dehydrogenase complex. J Biol Chem 279:32904-12. https://doi.org/10.1074/jbc.M404884200FEnzyme
Rinaldo 2002 Annu Rev Physiol2002Rinaldo P, Matern D, Bennett MJ (2002) Fatty acid oxidation disorders. Annu Rev Physiol 64:477-502. https://doi.org/10.1146/annurev.physiol.64.082201.154705F
Himms-Hagen 2001 Exp Biol Med (Maywood)2001Himms-Hagen J, Harper ME (2001) Physiological role of UCP3 may be export of fatty acids from mitochondria when fatty acid oxidation predominates: an hypothesis. Exp Biol Med (Maywood) 226:78-84. https://doi.org/10.1177/153537020122600204FSkeletal muscle
Fat
Rasmussen 2001 Am J Physiol Endocrinol Metab2001Rasmussen UF, Rasmussen HN, Krustrup P, Quistorff B, Saltin B, Bangsbo J (2001) Aerobic metabolism of human quadriceps muscle: in vivo data parallel measurements on isolated mitochondria. Am J Physiol Endocrinol Metab 280:E301-7.LEAK
OXPHOS
ET		F
N
S
Gp
NS		Isolated mitochondriaHumanSkeletal muscle
Curti 1997 Neurosci Lett1997Curti D, Rognoni F, Gasparini L, Cattaneo A, Paolillo M, Racchi M, Zani L, Bianchetti A, Trabucchi M, Bergamaschi S, Govoni S (1997) Oxidative metabolism in cultured fibroblasts derived from sporadic Alzheimer's disease (AD) patients. Neurosci Lett 236:13-6.LEAKFIntact organismHumanHeart
Moyes 1990 Am J Physiol1990Moyes CD, Buck LT, Hochachka PW (1990) Mitochondrial and peroxisomal fatty acid oxidation in elasmobranchs. Am J Physiol 258:R756-62.OXPHOSFIsolated mitochondriaFishesHeart
Skeletal muscle
Moyes 1989 J Exp Biol1989Moyes CD, Buck LT, Hochachka PW, Suarez RK (1989) Oxidative properties of carp red and white muscle. J Exp Biol 143:321-31.OXPHOSF
N
Gp		Isolated mitochondriaSkeletal muscle
Vamecq 1987 Biochem J1987Vamecq J, Schepers L, Parmentier G, Mannaerts GP (1987) Inhibition of peroxisomal fatty acyl-CoA oxidase by antimycin A. Biochem J 248:603-7.F
ROX		Oxidase;biochemical oxidation
Halestrap 1986 Biochem J1986Halestrap AP, Dunlop JL (1986) Intramitochondrial regulation of fatty acid beta-oxidation occurs between flavoprotein and ubiquinone. A role for changes in the matrix volume. Biochem J 239:559-65. https://doi.org/10.1042/bj2390559LEAK
OXPHOS
ET		F
N
S
DQ		Isolated mitochondriaRatLiver
Gustafson 1986 J Biol Chem1986Gustafson WG, Feinberg BA, McFarland JT (1986) Energetics of beta-oxidation. Reduction potentials of general fatty acyl-CoA dehydrogenase, electron transfer flavoprotein, and fatty acyl-CoA substrates. J Biol Chem 261:7733-41FPig
Berry 1983 Eur J Biochem1983Berry MN, Gregory RB, Grivell AR, Wallace PG (1983) Compartmentation of fatty acid oxidation in liver cells. Eur J Biochem 131:215-22. doi: 10.1111/j.1432-1033.1983.tb07252.xFIntact cellsRatLiver
Boveris 1973 Biochem J1973Boveris A, Chance B (1973) The mitochondrial generation of hydrogen peroxide. General properties and effect of hyperbaric oxygen. Biochem J 134:707-16.LEAK
OXPHOS
ET		F
N
S
NS		Isolated mitochondriaRat
Birds		Heart
Koenig 1969 Biochem J1969König T, Nicholls DG, Garland PB (1969) The inhibition of pyruvate and Ls(+)-isocitrate oxidation by succinate oxidation in rat liver mitochondria. Biochem J 114:589-96.LEAK
OXPHOS		F
N
S
NS		Isolated mitochondriaRatHeart
Liver
Crane 1956 J Biol Chem1956Crane FL, Beinert H (1956) On the mechanism of dehydrogenation of fatty acyl derivatives of coenzyme A. II. The electron-transferring flavoprotein. J Biol Chem 218:717-31.F
Geyer 1951 J Biol Chem1951Geyer RP, Cunningham M, Bendergast J (1951) Inhibition studies on radioactive fatty acid metabolism. J Biol Chem 188:185-91F
S		RatLiver
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