O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3865


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 484
2 Exercise physiology;nutrition;life style 642 888
3 Comparative MiP;environmental MiP 297 434
4 Pharmacology;toxicology 695 830
5 mt-Biogenesis;mt-density 233 307
6 Genetic knockout;overexpression 521 579
7 Instruments;methods 217 322


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 235 361
2 Alzheimer's 61 82
3 Autism 3 7
4 Cancer 304 402
5 Cardiovascular 155 221
6 COPD 8 11
7 Diabetes 301 401
8 Inherited 60 81
9 Infectious 37 50
10 Myopathy 55 66
11 Neurodegenerative 147 202
12 Obesity 208 348
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 229 297


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 89 146
2 Cryopreservation 34 57
3 Hypoxia 75 107
4 Ischemia-reperfusion 295 397
5 Oxidative stress;RONS 533 739
6 Permeability transition 66 87
7 Temperature: hypothermia; hyperthermia 88 105


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1215 1720
2 Pig 79 91
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1093 1291
9 Rat 780 1002
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 51 66
4 Caenorhabditis elegans Nematodes) 19 27
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 53 73
7 Comparative MiP 297 434


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 10 14
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 100 130
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 19 29
9 Nematodes » Caenorhabditis elegans 4 9
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 27 47
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 31 43
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 152 213
2 Genital 81 110
3 Heart 618 799
4 Kidney 124 152
5 Liver 550 708
6 Lung;Gill 49 64
7 Nervous system 513 613
8 Skeletal muscle 933 1148


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 220 270
2 Endothelial;epithelial;mesothelial cell 223 253
3 Fibroblast 171 217
4 Islet cell;pancreas;thymus 45 55
5 Leukemia 22 25
6 Lymphocyte 48 62
7 Platelets 102 120
8 Stem cells 31 41


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 73 91
3 HeLa 30 43
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 271 308


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 43 213
2 Intact organ 21 34
3 Living cells 950 1049
4 Permeabilized cells 562 593
5 Permeabilized tissue 944 1028
6 Homogenate 299 334
7 Isolated mitochondria 1087 1356
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 68
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 429 513
3 Complex II;succinate dehydrogenase CII 379 448
4 Complex III CIII 289 333
5 Complex IV;cytochrome c oxidase CIV 390 457
6 Complex V;ATP synthase CV 211 249
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 75 95
11 Uncoupling protein 57 62


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 71 104
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 88 133
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 38 47
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 73
10 Inhibitor Inhibitor kinetics 127 155
11 Ion;substrate transport 54 94
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


97 147
13 Oxygen kinetics 96 127
14 Q-junction effect 6 7
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 175 227
17 Temperature Temperature dependence 59 82
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control states

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2356 2552
2 R ROUTINE ROUTINE respiration Physiological state, living cells 717 776
3 E ET ET capacity Maximal noncoupled respiration 1637 1721
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2044 2172


Pathway control states

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 490 584
2 N N-pathway control state NADH-linked, level 4 1993 2113
3 S S-pathway control state Succinate-linked, level 3 1333 1404
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 124 142
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 562 588
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1240 1286
8 Other 123 139
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1148 1190


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 933 1148
2 O2k-Publications: Human heart 618 799
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3865 3865
2 TIP2k 41 41
3 O2k-Fluorometry 254 260
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


47 51
7 Ca2+ O2k-ISE Module 6 6
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 12 66
10 Instruments;methods 217 322
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 27 33