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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4415


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (357 entries) 357 500
2 Exercise physiology;nutrition;life style 713 989
3 Comparative MiP;environmental MiP 313 459
4 Pharmacology;toxicology 802 958
5 mt-Biogenesis;mt-density 245 327
6 Genetic knockout;overexpression 608 674
7 Instruments;methods 263 398


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 256 391
2 Alzheimer's 68 92
3 Autism 7 11
4 Cancer 333 443
5 Cardiovascular 190 259
6 COPD 9 12
7 Diabetes 339 441
8 Inherited 61 93
9 Infectious 47 65
10 Myopathy 65 76
11 Neurodegenerative 159 220
12 Obesity 240 382
13 Parkinson's 62 98
14 Sepsis 70 80
15 Other 267 338


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 154
2 Cryopreservation 38 61
3 Hypoxia 101 195
4 Ischemia-reperfusion 316 420
5 Oxidative stress;RONS 560 789
6 Permeability transition 71 93
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1372 1945
2 Pig 87 99
3 Horse 26 33
4 Bovines 22 70
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1275 1488
9 Rat 843 1082
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 51 82
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 20
3 Drosophila Hexapods) 61 78
4 Caenorhabditis elegans Nematodes) 23 31
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 60 84
7 Comparative MiP 313 459


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 13 24
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 109 145
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 24 41
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 32 64
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 56
14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 43
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 177 241
2 Genital 91 122
3 Heart 687 886
4 Kidney 136 168
5 Liver 614 791
6 Lung;Gill 55 75
7 Nervous system 574 691
8 Skeletal muscle 1038 1284


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 235 290
2 Endothelial;epithelial;mesothelial cell 244 279
3 Fibroblast 197 256
4 Islet cell;pancreas;thymus 51 63
5 Leukemia 22 25
6 Lymphocyte 55 73
7 Platelets 113 131
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 89 109
3 HeLa 36 53
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 35
7 Other cells and cell lines 289 333


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 51 242
2 Intact organ 22 36
3 Living cells 1089 1221
4 Permeabilized cells 674 707
5 Permeabilized tissue 1048 1135
6 Homogenate 349 387
7 Isolated mitochondria 1201 1492
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 26
2 Complex I CI 452 541
3 Complex II;succinate dehydrogenase CII 395 467
4 Complex III CIII 298 348
5 Complex IV;cytochrome c oxidase CIV 402 473
6 Complex V;ATP synthase CV 219 259
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 80
9 Supercomplex 45 61
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 106
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 147 198
2 ATP production 78 117
3 Aerobic glycolysis 48 92
4 Amino acid 9 19
5 Calcium 100 169
6 Coupling efficiency;uncoupling 81 147
7 Cyt c Cytochrome c 39 52
8 Fatty acid FA substrate kinetics 120 145
9 Flux control 53 85
10 Inhibitor Inhibitor kinetics 127 159
11 Ion;substrate transport 60 107
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


106 161
13 Oxygen kinetics 103 141
14 Q-junction effect 13 55
15 Redox state 50 85
16 Substrate Fuel substrate kinetics 179 231
17 Temperature Temperature dependence 70 95
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 54 69


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2703 2915
2 R ROUTINE ROUTINE respiration Physiological state, living cells 829 911
3 E ET ET capacity Maximal noncoupled respiration 1923 2021
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2424 2569


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 565 663
2 N N-pathway control state NADH-linked, level 4 2313 2452
3 S S-pathway control state Succinate-linked, level 3 1571 1652
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 148 170
5 DQ Duorquinol-linked, level 2 23 27
6 CIV Complex IV single step Ascorbate & TMPD, level 1 655 682
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1461 1513
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1407 1457


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1038 1284
2 O2k-Publications: Human heart 687 886
3 O2k-Publications: Skeletal muscle - human vs mouse 37 46
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4415 4415
2 TIP2k 42 42
3 O2k-Fluorometry 311 316
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


52 56
7 Ca2+ O2k-ISE Module 8 8
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 13 69
10 Instruments;methods 263 398
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35