From Bioblast
O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of Oroboros Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent Oroboros Publications
- » O2k-briefs
- » Oroboros Publications - chronological: 4806
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (364 entries) 364 518 2 Exercise physiology;nutrition;life style 772 1073 3 Comparative MiP;environmental MiP 329 481 4 Pharmacology;toxicology 856 1054 5 mt-Biogenesis;mt-density 250 334 6 Genetic knockout;overexpression 680 750 7 Instruments;methods 279 422
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 286 432 2 Alzheimer's 73 96 3 Autism 8 12 4 Cancer 369 530 5 Cardiovascular 214 297 6 COPD 10 13 7 Diabetes 352 470 8 Inherited 64 98 9 Infectious 52 71 10 Myopathy 78 90 11 Neurodegenerative 171 237 12 Obesity 261 431 13 Parkinson's 71 108 14 Sepsis 75 86 15 Other 300 372
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 94 158 2 Cryopreservation 41 67 3 Hypoxia 118 232 4 Ischemia-reperfusion 333 440 5 Oxidative stress;RONS 586 846 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 93 114
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 18 25 3 Drosophila (» Hexapods) 68 94 4 Caenorhabditis elegans (» Nematodes) 24 33 5 Artemia (» Crustaceans) 12 19 6 Saccharomyces cerevisiae (» Fungi) 61 88 7 Comparative MiP 329 481
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 16 28 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 130 167 5 Hexapods insects, springtails; » Drosophila 35 44 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63 12 Plants 29 58 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 43 60 14 Eubacteria true bacteria, cyanobacteria, spirochetes 26 52 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 191 266 2 Genital 92 123 3 Heart 737 950 4 Kidney 156 189 5 Liver 657 853 6 Lung;Gill 60 84 7 Nervous system 621 749 8 Skeletal muscle 1128 1396
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 263 330 2 Endothelial;epithelial;mesothelial cell 262 297 3 Fibroblast 208 272 4 Islet cell;pancreas;thymus 55 67 5 Leukemia 22 25 6 Lymphocyte 59 78 7 Platelets 123 153 8 Stem cells 37 49
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 97 118 3 HeLa 39 56 4 Neuroblastoma 44 51 5 HUVEC 21 24 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 297 343
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 54 252 2 Intact organ 23 38 3 Living cells 1194 1344 4 Permeabilized cells 727 766 5 Permeabilized tissue 1135 1229 6 Homogenate 388 432 7 Isolated mitochondria 1288 1597 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 26 2 Complex I CI 461 608 3 Complex II;succinate dehydrogenase CII 413 639 4 Complex III CIII 302 365 5 Complex IV;cytochrome c oxidase CIV 408 501 6 Complex V;ATP synthase CV 221 269 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 60 87 9 Supercomplex 49 78 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 83 110 11 Uncoupling protein 61 67
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 154 211 2 ATP production 79 124 3 Aerobic glycolysis 50 98 4 Amino acid 9 21 5 Calcium 106 178 6 Coupling efficiency;uncoupling 86 168 7 Cyt c Cytochrome c 43 57 8 Fatty acid FA substrate kinetics 130 163 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 134 173 11 Ion;substrate transport 65 117 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- Oroboros Potentiometry
- » Oroboros Catalogue: O2k-TPP+ ISE-Module
- » Oroboros Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - Oroboros Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- Oroboros Potentiometry
- Oroboros FluoRespirometry
- » Oroboros Catalogue: Oroboros FluoRespirometer
- » Oroboros Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - Oroboros Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - Oroboros Procedures: TMRM
- Oroboros FluoRespirometry
- Oroboros Publications
118 182 13 Oxygen kinetics 109 150 14 Q-junction effect 13 56 15 Redox state 59 99 16 Substrate Fuel substrate kinetics 183 239 17 Temperature Temperature dependence 75 102 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 58 73
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2925 3154 2 R 
ROUTINE respiration
Physiological state, living cells 918 1006 3 E 
ET capacity
Maximal noncoupled respiration 2117 2230 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2681 2841
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 626 770 2 N N-pathway control state NADH-linked, level 4 2532 2681 3 S S-pathway control state Succinate-linked, level 3 1729 1838 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 162 188 5 DQ Duorquinol-linked, level 2 27 32 6 CIV Complex IV single step Ascorbate & TMPD, level 1 720 748 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1618 1676 8 Other 134 150 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1563 1615
Additional labels
# O2k-Publications MitoPedia: Comment O2k Total 1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 235 240 2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19 3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9 4 PBMCs Peripheral blood mononuclear cell (PBMC) 54 59 5 Photosynthesis Photosynthesis 5 55 6 Tissue normoxia Normoxia 17 27
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1128 1396 2 O2k-Publications: Human heart 737 950 3 O2k-Publications: Skeletal muscle - human vs mouse 41 50
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
