O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3802


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 483
2 Exercise physiology;nutrition;life style 635 881
3 Comparative MiP;environmental MiP 292 429
4 Pharmacology;toxicology 679 813
5 mt-Biogenesis;mt-density 232 306
6 Genetic knockout;overexpression 510 568
7 Instruments;methods 211 316


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 230 356
2 Alzheimer's 60 81
3 Autism 3 7
4 Cancer 300 398
5 Cardiovascular 150 216
6 COPD 8 11
7 Diabetes 295 395
8 Inherited 60 81
9 Infectious 36 48
10 Myopathy 55 66
11 Neurodegenerative 145 200
12 Obesity 202 342
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 227 295


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 87 144
2 Cryopreservation 34 57
3 Hypoxia 73 105
4 Ischemia-reperfusion 291 393
5 Oxidative stress;RONS 526 732
6 Permeability transition 66 87
7 Temperature: hypothermia; hyperthermia 85 102


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1199 1702
2 Pig 78 90
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1074 1272
9 Rat 770 992
10 Guinea pig 21 34
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 50 65
4 Caenorhabditis elegans Nematodes) 19 27
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 72
7 Comparative MiP 292 429


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 99 129
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 18 28
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 30 42
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 152 213
2 Genital 81 110
3 Heart 610 791
4 Kidney 118 146
5 Liver 546 704
6 Lung;Gill 47 62
7 Nervous system 507 607
8 Skeletal muscle 919 1134


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 218 268
2 Endothelial;epithelial;mesothelial cell 220 250
3 Fibroblast 170 216
4 Islet cell;pancreas;thymus 45 55
5 Leukemia 22 25
6 Lymphocyte 48 62
7 Platelets 102 120
8 Stem cells 30 40


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 72 90
3 HeLa 29 42
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 268 305


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 42 211
2 Intact organ 21 34
3 Living cells 932 1031
4 Permeabilized cells 557 588
5 Permeabilized tissue 930 1014
6 Homogenate 292 327
7 Isolated mitochondria 1075 1344
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 68
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 425 509
3 Complex II;succinate dehydrogenase CII 375 444
4 Complex III CIII 286 330
5 Complex IV;cytochrome c oxidase CIV 386 453
6 Complex V;ATP synthase CV 207 245
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 75 95
11 Uncoupling protein 57 62


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 71 104
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 88 133
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 38 47
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 73
10 Inhibitor Inhibitor kinetics 127 155
11 Ion;substrate transport 54 94
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


95 145
13 Oxygen kinetics 95 126
14 Q-junction effect 6 7
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 175 227
17 Temperature Temperature dependence 59 82
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control states

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2318 2514
2 R ROUTINE ROUTINE respiration Physiological state, living cells 704 763
3 E ET ET capacity Maximal noncoupled respiration 1603 1687
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1999 2127


Pathway control states

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 481 575
2 N N-pathway control state NADH-linked, level 4 1954 2074
3 S S-pathway control state Succinate-linked, level 3 1309 1380
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 122 140
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 554 580
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1212 1258
8 Other 123 139
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1117 1159


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 919 1134
2 O2k-Publications: Human heart 610 791
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3802 3802
2 TIP2k 41 41
3 O2k-Fluorometry 244 250
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 7 7
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


46 50
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 61 77
9 Theoretical background 12 66
10 Instruments;methods 211 316
11 O2k-Fluorometry - Fluorophores 19 19
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 26 32