O2k-Publications: Topics

From Bioblast
Jump to: navigation, search

Oroboros Instruments

News         O2k-Products         O2k-Purchase         O2k-Open Support         O2k-Publications         O2k-Workshops and Events         O2k-Network         O2k-Feedback         NextGen-O2k



O2k-Publications: Topics

Mitochondria and Cell Research
O2k-Publications: chronological
Publications in the MiPMap


» Recent O2k-Publications
» O2k-Publications - chronological: 3421


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (330 entries) 330 450
2 Exercise physiology;nutrition;life style 565 750
3 Comparative MiP;environmental MiP 277 409
4 Pharmacology;toxicology 544 645
5 mt-Biogenesis;mt-density 227 298
6 Genetic knockout;overexpression 442 500
7 Instruments;methods 202 299


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 214 321
2 Alzheimer's 55 73
3 Autism 2 4
4 Cancer 269 359
5 Cardiovascular 132 171
6 COPD 8 10
7 Diabetes 260 340
8 Inherited 51 71
9 Infectious 26 31
10 Myopathy 49 58
11 Neurodegenerative 134 181
12 Obesity 170 230
13 Parkinson's 51 80
14 Sepsis 55 64
15 Other 186 248


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 74 124
2 Cryopreservation 32 55
3 Hypoxia 63 91
4 Ischemia-reperfusion 274 375
5 Oxidative stress;RONS 483 681
6 Permeability transition 52 71
7 Temperature: hypothermia; hyperthermia 82 99


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1064 1452
2 Pig 75 87
3 Horse 22 28
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 948 1143
9 Rat 701 916
10 Guinea pig 18 31
11 Other mammals including only mammals that are not listed as mammalian species above 43 71
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 8 13
3 Drosophila Hexapods) 46 60
4 Caenorhabditis elegans Nematodes) 13 20
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 70
7 Comparative MiP 277 409


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 121
5 Hexapods insects, springtails; » Drosophila 26 35
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 36
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 17 27
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 26 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 129 159
2 Genital 70 99
3 Heart 551 723
4 Kidney 108 135
5 Liver 502 653
6 Lung;Gill 40 52
7 Nervous system 474 568
8 Skeletal muscle 835 1029


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 182 229
2 Endothelial;epithelial;mesothelial cell 188 217
3 Fibroblast 158 203
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 49 62
6 Platelet 87 103
7 Stem cells 23 33


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 64 81
3 HeLa 25 38
4 Neuroblastoma 27 30
5 HUVEC 19 22
6 Macrophage-derived cell lines 22 31
7 Other cells and cell lines 251 288


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 39 108
2 Intact organ 20 31
3 Living cells 817 912
4 Permeabilized cells 476 504
5 Permeabilized tissue 837 913
6 Homogenate 253 286
7 Isolated mitochondria 971 1231
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 67
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 23
2 Complex I CI 395 478
3 Complex II;succinate dehydrogenase CII 350 418
4 Complex III CIII 265 309
5 Complex IV;cytochrome c oxidase CIV 364 430
6 Complex V;ATP synthase CV 190 228
7 mt-Inner membrane transporter 29 41
8 Marker enzyme 48 69
9 Supercomplex 37 49
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 67 86
11 Uncoupling protein 51 56


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 142 183
2 ATP production 60 92
3 Aerobic glycolysis 39 74
4 Amino acid 7 16
5 Calcium 66 98
6 Coupling efficiency;uncoupling 69 127
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 109 131
9 Flux control 44 69
10 Inhibitor Inhibitor kinetics 126 154
11 Ion;substrate transport 47 86
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


83 131
13 Oxygen kinetics 88 119
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 170 221
17 Temperature Temperature dependence 55 78
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 67


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2065 2250
2 R ROUTINE ROUTINE respiration Physiological state, living cells 624 682
3 E ET ET-capacity Maximal noncoupled respiration 1409 1490
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1693 1814


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 425 518
2 N N-pathway control state NADH-linked, level 4 1692 1798
3 S S-pathway control state Succinate-linked, level 3 1147 1216
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 119
5 DQ Duorquinol-linked, level 2 15 18
6 CIV Complex IV single step Ascorbate & TMPD, level 1 482 507
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1044 1086
8 Other 121 136
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 947 988


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 835 1029
2 O2k-Publications: Human heart 551 723
3 O2k-Publications: Skeletal muscle - human vs mouse 35 43
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3421 3421
2 TIP2k 41 41
3 O2k-Fluorometry 200 205
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


47 51
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 23 24
8 O2k-Protocol 69 86
9 Theoretical background 12 65
10 Instruments;methods 202 299
11 O2k-Fluorometry - Fluorophores 121 121
12 PBI Shredder Homogenate preparation 21 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 24 31