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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4665


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (362 entries) 362 513
2 Exercise physiology;nutrition;life style 748 1039
3 Comparative MiP;environmental MiP 320 472
4 Pharmacology;toxicology 841 1038
5 mt-Biogenesis;mt-density 248 331
6 Genetic knockout;overexpression 647 715
7 Instruments;methods 273 416


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 273 414
2 Alzheimer's 70 93
3 Autism 7 11
4 Cancer 355 512
5 Cardiovascular 206 287
6 COPD 10 13
7 Diabetes 347 464
8 Inherited 64 99
9 Infectious 50 69
10 Myopathy 77 89
11 Neurodegenerative 168 234
12 Obesity 253 417
13 Parkinson's 67 104
14 Sepsis 74 84
15 Other 283 355


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 93 156
2 Cryopreservation 41 67
3 Hypoxia 113 223
4 Ischemia-reperfusion 325 432
5 Oxidative stress;RONS 578 835
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1436 2045
2 Pig 89 103
3 Horse 27 34
4 Bovines 24 76
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1361 1589
9 Rat 873 1129
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 52 83
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 15 22
3 Drosophila Hexapods) 64 90
4 Caenorhabditis elegans Nematodes) 24 33
5 Artemia Crustaceans) 12 19
6 Saccharomyces cerevisiae Fungi) 61 88
7 Comparative MiP 320 472


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 33 42
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 28 57
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 41 58
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 185 258
2 Genital 92 123
3 Heart 722 934
4 Kidney 150 183
5 Liver 642 837
6 Lung;Gill 58 81
7 Nervous system 604 730
8 Skeletal muscle 1093 1357


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 252 318
2 Endothelial;epithelial;mesothelial cell 256 291
3 Fibroblast 202 266
4 Islet cell;pancreas;thymus 54 66
5 Leukemia 22 25
6 Lymphocyte 57 75
7 Platelets 120 150
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 93 114
3 HeLa 38 55
4 Neuroblastoma 42 49
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 52 247
2 Intact organ 23 38
3 Living cells 1148 1296
4 Permeabilized cells 707 745
5 Permeabilized tissue 1104 1198
6 Homogenate 373 417
7 Isolated mitochondria 1251 1557
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 460 606
3 Complex II;succinate dehydrogenase CII 410 637
4 Complex III CIII 300 362
5 Complex IV;cytochrome c oxidase CIV 405 496
6 Complex V;ATP synthase CV 219 266
7 mt-Inner membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 77
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 152 207
2 ATP production 78 123
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 104 177
6 Coupling efficiency;uncoupling 81 160
7 Cyt c Cytochrome c 42 56
8 Fatty acid FA substrate kinetics 127 159
9 Flux control 54 86
10 Inhibitor Inhibitor kinetics 131 169
11 Ion;substrate transport 63 114
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


114 177
13 Oxygen kinetics 105 146
14 Q-junction effect 14 57
15 Redox state 56 96
16 Substrate Fuel substrate kinetics 181 236
17 Temperature Temperature dependence 73 100
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 55 70


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2836 3063
2 R ROUTINE ROUTINE respiration Physiological state, living cells 880 966
3 E ET ET capacity Maximal noncoupled respiration 2039 2147
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2577 2733


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 604 747
2 N N-pathway control state NADH-linked, level 4 2447 2595
3 S S-pathway control state Succinate-linked, level 3 1667 1775
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 154 180
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 696 724
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1560 1616
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1501 1553


Additional labels

# O2k-Publications MitoPedia: Comment O2k Total
1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 226 231
2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19
3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9
4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55
5 Photosynthesis Photosynthesis 4 53
6 Tissue normoxia Normoxia 17 27


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1093 1357
2 O2k-Publications: Human heart 722 934
3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4665 4665
2 TIP2k 44 44
3 O2k-Fluorometry 343 349
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


54 58
7 Ca2+ O2k-ISE Module 10 10
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 24 25
8 O2k-Protocol 71 93
9 Theoretical background 13 69
10 Instruments;methods 273 416
11 O2k-Fluorometry - Fluorophores 22 22
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35