From Bioblast
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O2k-Publications: Topics
- Mitochondria and Cell Research
Contents
- 1 Mitochondrial physiology: MiP areas
- 2 Pathological states
- 3 Stress conditions
- 4 Organisms
- 5 Tissues and cells
- 6 Preparations
- 7 Enzymes
- 8 Regulation
- 9 Coupling control states
- 10 Pathway control states
- 11 MiPMap combinations - examples
- 12 O2k-Manuals and protocols and specific instrumental applications
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (326 entries) 326 446 2 Exercise physiology;nutrition;life style 555 734 3 Comparative MiP;environmental MiP 272 398 4 Pharmacology;toxicology 528 615 5 mt-Biogenesis;mt-density 226 292 6 Genetic knockout;overexpression 434 488 7 Instruments;methods 198 293
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 209 313 2 Alzheimer's 54 72 3 Autism 2 3 4 Cancer 261 348 5 Cardiovascular 129 168 6 COPD 8 10 7 Diabetes 257 332 8 Inherited 51 71 9 Infectious 25 30 10 Myopathy 48 57 11 Neurodegenerative 134 180 12 Obesity 167 225 13 Parkinson's 51 76 14 Sepsis 55 64 15 Other 182 242
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 73 129 2 Cryopreservation 32 55 3 Hypoxia 62 90 4 Ischemia-reperfusion 272 372 5 Oxidative stress;RONS 476 672 6 Permeability transition 52 71 7 Temperature: hypothermia; hyperthermia 81 97
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 3 4 2 Zebrafish (» Fishes) 7 12 3 Drosophila (» Hexapods) 44 57 4 Caenorhabditis elegans (» Nematodes) 11 18 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 52 70 7 Comparative MiP 272 398
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 10 20 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 9 13 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 122 5 Hexapods insects, springtails; » Drosophila 26 34 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 16 26 9 Nematodes » Caenorhabditis elegans 3 8 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59 12 Plants 26 45 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38 14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 128 157 2 Genital 70 94 3 Heart 544 710 4 Kidney 108 135 5 Liver 496 646 6 Lung;Gill 40 53 7 Nervous system 470 562 8 Skeletal muscle 815 1006
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 180 225 2 Endothelial;epithelial;mesothelial cell 184 211 3 Fibroblast 157 203 4 Islet cell;pancreas;thymus 39 49 5 Lymphocyte 48 60 6 Platelet 83 97 7 Stem cells 23 34
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 63 81 3 HeLa 24 37 4 Neuroblastoma 26 27 5 HUVEC 19 22 6 Macrophage-derived cell lines 21 30 7 Other cells and cell lines 250 290
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 38 107 2 Intact organ 20 31 3 Living cells 804 899 4 Permeabilized cells 464 491 5 Permeabilized tissue 822 898 6 Homogenate 251 283 7 Isolated mitochondria 958 1216 8 SMP Submitochondrial particles 9 21 9 Chloroplasts 1 9 10 Enzyme 38 67 11 Oxidase and biochemical oxidation 36 46
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 23 2 Complex I CI 392 473 3 Complex II;succinate dehydrogenase CII 348 416 4 Complex III CIII 264 308 5 Complex IV;cytochrome c oxidase CIV 364 429 6 Complex V;ATP synthase CV 190 228 7 mt-Inner membrane transporter 28 38 8 Marker enzyme 48 69 9 Supercomplex 36 47 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 66 83 11 Uncoupling protein 51 56
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 143 184 2 ATP production 59 91 3 Aerobic glycolysis 39 74 4 Amino acid 7 16 5 Calcium 65 97 6 Coupling efficiency;uncoupling 69 127 7 Cyt c Cytochrome c 37 45 8 Fatty acid FA substrate kinetics 108 129 9 Flux control 44 69 10 Inhibitor Inhibitor kinetics 126 154 11 Ion;substrate transport 46 83 12 mt-Membrane potential Mitochondrial membrane potential
- » Keywords: Force and membrane potential
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
82 130 13 Oxygen kinetics 88 118 14 Q-junction effect 5 6 15 Redox state 44 68 16 Substrate Fuel substrate kinetics 170 221 17 Temperature Temperature dependence 53 76 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 67
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2031 2213 2 R 
ROUTINE respiration
Physiological state, living cells 616 673 3 E 
ET-capacity
Maximal noncoupled respiration 1376 1456 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 1656 1775
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 420 513 2 N N-pathway control state NADH-linked, level 4 1659 1762 3 S S-pathway control state Succinate-linked, level 3 1123 1191 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 118 5 DQ Duorquinol-linked, level 2 14 17 6 CIV Complex IV single step Ascorbate & TMPD, level 1 473 497 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1021 1062 8 Other 121 135 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 921 960
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 815 1006 2 O2k-Publications: Human heart 544 710 3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 22 29
