O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3726


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 483
2 Exercise physiology;nutrition;life style 622 868
3 Comparative MiP;environmental MiP 290 427
4 Pharmacology;toxicology 663 797
5 mt-Biogenesis;mt-density 231 305
6 Genetic knockout;overexpression 501 559
7 Instruments;methods 208 311


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 226 352
2 Alzheimer's 60 81
3 Autism 3 7
4 Cancer 293 391
5 Cardiovascular 147 213
6 COPD 8 11
7 Diabetes 287 387
8 Inherited 60 81
9 Infectious 34 46
10 Myopathy 54 65
11 Neurodegenerative 145 200
12 Obesity 190 330
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 218 286


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 85 142
2 Cryopreservation 33 56
3 Hypoxia 70 102
4 Ischemia-reperfusion 289 391
5 Oxidative stress;RONS 519 725
6 Permeability transition 62 83
7 Temperature: hypothermia; hyperthermia 85 102


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1172 1673
2 Pig 78 90
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1047 1245
9 Rat 753 975
10 Guinea pig 20 33
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 50 65
4 Caenorhabditis elegans Nematodes) 18 26
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 72
7 Comparative MiP 290 427


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 98 127
5 Hexapods insects, springtails; » Drosophila 30 39
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 18 28
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 28 40
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 149 210
2 Genital 79 108
3 Heart 598 779
4 Kidney 117 145
5 Liver 541 699
6 Lung;Gill 46 61
7 Nervous system 500 600
8 Skeletal muscle 901 1116


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 211 261
2 Endothelial;epithelial;mesothelial cell 211 241
3 Fibroblast 168 214
4 Islet cell;pancreas;thymus 43 53
5 Leukemia 23 26
6 Lymphocyte 48 62
7 Platelets 101 119
8 Stem cells 30 40


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 69 87
3 HeLa 29 42
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 23 32
7 Other cells and cell lines 266 303


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 40 207
2 Intact organ 21 34
3 Living cells 907 1005
4 Permeabilized cells 542 572
5 Permeabilized tissue 910 994
6 Homogenate 287 321
7 Isolated mitochondria 1059 1327
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 67
11 Oxidase and biochemical oxidation 37 47


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 423 507
3 Complex II;succinate dehydrogenase CII 373 441
4 Complex III CIII 285 329
5 Complex IV;cytochrome c oxidase CIV 385 452
6 Complex V;ATP synthase CV 206 244
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 75 95
11 Uncoupling protein 57 62


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 70 103
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 86 131
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 37 46
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 73
10 Inhibitor Inhibitor kinetics 128 156
11 Ion;substrate transport 51 91
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


94 144
13 Oxygen kinetics 95 126
14 Q-junction effect 6 7
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 173 224
17 Temperature Temperature dependence 58 81
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 51 67


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2268 2464
2 R ROUTINE ROUTINE respiration Physiological state, living cells 682 741
3 E ET ET-capacity Maximal noncoupled respiration 1564 1647
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1937 2065


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 467 561
2 N N-pathway control state NADH-linked, level 4 1906 2026
3 S S-pathway control state Succinate-linked, level 3 1280 1351
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 118 136
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 542 568
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1181 1227
8 Other 123 139
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1089 1131


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 901 1116
2 O2k-Publications: Human heart 598 779
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3726 3726
2 TIP2k 41 41
3 O2k-Fluorometry 235 241
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 7 7
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


46 50
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 61 77
9 Theoretical background 12 65
10 Instruments;methods 208 311
11 O2k-Fluorometry - Fluorophores 19 19
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 26 32