From Bioblast
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O2k-Publications: Topics
- Mitochondria and Cell Research
Contents
- 1 Mitochondrial physiology: MiP areas
- 2 Pathological states
- 3 Stress conditions
- 4 Organisms
- 5 Tissues and cells
- 6 Preparations
- 7 Enzymes
- 8 Regulation
- 9 Coupling control states
- 10 Pathway control states
- 11 MiPMap combinations - examples
- 12 O2k-Manuals and protocols and specific instrumental applications
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (330 entries) 330 450 2 Exercise physiology;nutrition;life style 565 750 3 Comparative MiP;environmental MiP 277 409 4 Pharmacology;toxicology 544 645 5 mt-Biogenesis;mt-density 227 298 6 Genetic knockout;overexpression 442 500 7 Instruments;methods 202 299
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 214 321 2 Alzheimer's 55 73 3 Autism 2 4 4 Cancer 269 359 5 Cardiovascular 132 171 6 COPD 8 10 7 Diabetes 260 340 8 Inherited 51 71 9 Infectious 26 31 10 Myopathy 49 58 11 Neurodegenerative 134 181 12 Obesity 170 230 13 Parkinson's 51 80 14 Sepsis 55 64 15 Other 186 248
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 74 124 2 Cryopreservation 32 55 3 Hypoxia 63 91 4 Ischemia-reperfusion 274 375 5 Oxidative stress;RONS 483 681 6 Permeability transition 52 71 7 Temperature: hypothermia; hyperthermia 82 99
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 3 4 2 Zebrafish (» Fishes) 8 13 3 Drosophila (» Hexapods) 46 60 4 Caenorhabditis elegans (» Nematodes) 13 20 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 52 70 7 Comparative MiP 277 409
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 10 20 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 9 13 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 121 5 Hexapods insects, springtails; » Drosophila 26 35 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 36 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 17 27 9 Nematodes » Caenorhabditis elegans 3 8 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61 12 Plants 26 45 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38 14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 129 159 2 Genital 70 99 3 Heart 551 723 4 Kidney 108 135 5 Liver 502 653 6 Lung;Gill 40 52 7 Nervous system 474 568 8 Skeletal muscle 835 1029
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 182 229 2 Endothelial;epithelial;mesothelial cell 188 217 3 Fibroblast 158 203 4 Islet cell;pancreas;thymus 39 49 5 Lymphocyte 49 62 6 Platelet 87 103 7 Stem cells 23 33
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 64 81 3 HeLa 25 38 4 Neuroblastoma 27 30 5 HUVEC 19 22 6 Macrophage-derived cell lines 22 31 7 Other cells and cell lines 251 288
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 39 108 2 Intact organ 20 31 3 Living cells 817 912 4 Permeabilized cells 476 504 5 Permeabilized tissue 837 913 6 Homogenate 253 286 7 Isolated mitochondria 971 1231 8 SMP Submitochondrial particles 9 21 9 Chloroplasts 1 9 10 Enzyme 38 67 11 Oxidase and biochemical oxidation 36 46
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 23 2 Complex I CI 395 478 3 Complex II;succinate dehydrogenase CII 350 418 4 Complex III CIII 265 309 5 Complex IV;cytochrome c oxidase CIV 364 430 6 Complex V;ATP synthase CV 190 228 7 mt-Inner membrane transporter 29 41 8 Marker enzyme 48 69 9 Supercomplex 37 49 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 67 86 11 Uncoupling protein 51 56
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 142 183 2 ATP production 60 92 3 Aerobic glycolysis 39 74 4 Amino acid 7 16 5 Calcium 66 98 6 Coupling efficiency;uncoupling 69 127 7 Cyt c Cytochrome c 37 45 8 Fatty acid FA substrate kinetics 109 131 9 Flux control 44 69 10 Inhibitor Inhibitor kinetics 126 154 11 Ion;substrate transport 47 86 12 mt-Membrane potential Mitochondrial membrane potential
- » Keywords: Force and membrane potential
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
83 131 13 Oxygen kinetics 88 119 14 Q-junction effect 5 6 15 Redox state 44 68 16 Substrate Fuel substrate kinetics 170 221 17 Temperature Temperature dependence 55 78 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 67
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2065 2250 2 R 
ROUTINE respiration
Physiological state, living cells 624 682 3 E 
ET-capacity
Maximal noncoupled respiration 1409 1490 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 1693 1814
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 425 518 2 N N-pathway control state NADH-linked, level 4 1692 1798 3 S S-pathway control state Succinate-linked, level 3 1147 1216 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 119 5 DQ Duorquinol-linked, level 2 15 18 6 CIV Complex IV single step Ascorbate & TMPD, level 1 482 507 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1044 1086 8 Other 121 136 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 947 988
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 835 1029 2 O2k-Publications: Human heart 551 723 3 O2k-Publications: Skeletal muscle - human vs mouse 35 43
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 24 31
