Discontinuous system

From Bioblast


high-resolution terminology - matching measurements at high-resolution


Discontinuous system

Description

In a discontinuous system, gradients in continuous systems across the length, l, of the diffusion path [m], are replaced by differences across compartmental boundaries of zero thickness, and the local concentration is replaced by the free activity, [mol路dm-3]. The length of the diffusion path may not be constant along all diffusion pathways, spacial direction varies (e.g., in a spherical particle surrounded by a semipermeable membrane), and information on the diffusion paths may even be not known in a discontinuous system. In this case (e.g., in most treatments of the protonmotive force) the diffusion path is moved from the (ergodynamic) isomorphic force term to the (kinetic) mobility term. The synonym of a discontinuous system is compartmental or discretized system. In the first part of the definition of discontinuous systems, three compartments are considered: (1) the source compartment A, (2) the sink compartment B, and (3) the internal barrier compartment with thickness l. In a two-compartmental description, a system boundary is defined of zero thickness, such that the barrier comparment (e.g., a semipermeable membrane) is either part of the system (internal) or part of the environment (external). Similarly, the intermediary steps in a chemical reaction may be explicitely considered in an ergodnamic multi-comparment system; alternatively, the kinetic analysis of all intermediary steps may be collectively considered in the catalytic reaction mobility, reducing the measurement to a two-compartmental analysis of the substrate and product compartments.


Reference: Gnaiger 2020 BEC MitoPathways; System

Communicated by Gnaiger E 2018-09-17; last update 2019-01-05

Compartmental description of diffusion (d): vectorial flux and force in a discontinuous system

Three compartments [1]
  • Jd = -u路螖dF = -u路螖d/l
  • Force: 螖dF = 螖/l
  • Pressure: 3路螖 = RT路螖c
  • Free activity: 3 = RT路螖c/螖 = 螖c/螖lnc
Two compartments [1]
  • Jd = -b路螖dF = -b路螖d
  • Force: 螖dF = 螖
  • Pressure: 路螖 = RT路螖c
  • Free activity: = RT路螖c/螖 = 螖c/螖lnc (Gnaiger 1989)


Questions.jpg


Click to expand or collaps
Bioblast links: System - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>


References

  1. Gnaiger E (1989) Mitochondrial respiratory control: energetics, kinetics and efficiency. In: Energy transformations in cells and organisms. Wieser W, Gnaiger E (eds), Thieme, Stuttgart:6-17. - 禄Bioblast link芦
  2. Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun:112 pp. - 禄Bioblast link芦


MitoPedia concepts: Ergodynamics 

Cookies help us deliver our services. By using our services, you agree to our use of cookies.