https://wiki.oroboros.at/api.php?action=feedcontributions&user=Cecatto+Cristiane&feedformat=atomBioblast - User contributions [en]2024-03-29T06:40:48ZUser contributionsMediaWiki 1.36.1https://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=240681Template:Next oroboros ecosystem agenda2023-07-27T13:52:48Z<p>Cecatto Cristiane: </p>
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<div><br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
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*'''Aug- 01 Tu'''<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|'''Respiration might be inhibited in the presence of high concentrations of some saccharides due to the Crabtree effect '''<br><br />
It is observed in multiple cell types, such as tumor cells, bacteria or yeast, and it can be measured using SUIT-003 protocols. <br><br />
- »'''[[Crabtree effect]]'''«, »'''[[SUIT-003]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Leo Elettra]]« <br />
|}<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the Goldilocks Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
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*'''Aug- 07 Mo'''<br />
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*'''Aug- 08 Tu'''<br />
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*'''Aug- 09 We'''<br />
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*'''Aug- 10 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Reducing lipid hydroxides by GPX4 overexpression ameliorates the majority of muscle atrophy and weakness phenotypes present in mouse models of sarcopenia"''' <br><br />
* Czyżowska A, Brown J, Xu H, Sataranatarajan K, Kinter M, Tyrell VJ, O'Donnell VB, Van Remmen H (2023) Elevated phospholipid hydroperoxide glutathione peroxidase (GPX4) expression modulates oxylipin formation and inhibits age-related skeletal muscle atrophy and weakness. [[Czyzowska 2023 Redox Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[US OK Oklahoma City Van Remmen H]]«<br />
|}<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » '''[[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
----<br />
*'''Aug- 15 Tu'''<br />
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*'''Aug- 16 We'''<br />
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*'''Aug- 17 Th'''<br />
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*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
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*'''Aug- 21 Mo'''<br />
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*'''Aug- 22 Tu'''<br />
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*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN |FAT4BRAIN]]<br />
|'''"Understanding acylcarnitine metabolic and signaling pathways provides a better rationale for selecting targets for therapeutic interventions."''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
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*'''Aug- 28 Mo'''<br />
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*'''Aug- 29 Tu'''<br />
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*'''Aug- 30 We'''<br />
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*'''Aug- 31 Th'''<br />
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*'''Sep- 01 Fr'''<br />
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2023 Week 36<br />
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*'''Sep- 04 Mo'''<br />
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*'''Sep- 05 Tu'''<br />
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*'''Sep- 06 We'''<br />
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*'''Sep- 07 Th'''<br />
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*'''Sep- 08 Fr'''<br />
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2023 Week 37<br />
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*'''Sep- 11 Mo'''<br />
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*'''Sep- 12 Tu'''<br />
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*'''Sep- 13 We'''<br />
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*'''Sep- 14 Th'''<br />
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*'''Sep- 15 Fr'''<br />
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2023 Week 38<br />
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*'''Sep- 18 Mo'''<br />
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*'''Sep- 19 Tu'''<br />
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*'''Sep- 20 We'''<br />
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*'''Sep- 21 Th'''<br />
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*'''Sep- 22 Fr'''<br />
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2023 Week 39<br />
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*'''Sep- 25 Mo'''<br />
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*'''Sep- 26 Tu'''<br />
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*'''Sep- 27 We'''<br />
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*'''Sep- 28 Th'''<br />
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*'''Sep- 29 Fr'''<br />
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2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
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*'''Oct- 09 Mo'''<br />
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*'''Oct- 10 Tu'''<br />
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*'''Oct- 11 We'''<br />
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*'''Oct- 12 Th'''<br />
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*'''Oct- 13 Fr'''<br />
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2023 Week 42<br />
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*'''Oct- 16 Mo'''<br />
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*'''Oct- 17 Tu'''<br />
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*'''Oct- 18 We'''<br />
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*'''Oct- 19 Th'''<br />
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*'''Oct- 20 Fr'''<br />
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2023 Week 43<br />
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*'''Oct- 23 Mo'''<br />
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*'''Oct- 24 Tu'''<br />
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*'''Oct- 25 We'''<br />
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*'''Oct- 26 Th'''<br />
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*'''Oct- 27 Fr'''<br />
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2023 Week 44<br />
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*'''Oct- 30 Mo'''<br />
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*'''Oct- 31 Tu'''<br />
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*'''Nov- 01 We'''<br />
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*'''Nov- 02 Th'''<br />
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*'''Nov- 03 Fr'''<br />
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2023 Week 45<br />
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*'''Nov- 06 Mo'''<br />
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*'''Nov- 07 Tu'''<br />
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*'''Nov- 08 We'''<br />
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*'''Nov- 09 Th'''<br />
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*'''Nov- 10 Fr'''<br />
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2023 Week 46<br />
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*'''Nov- 13 Mo'''<br />
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*'''Nov- 14 Tu'''<br />
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*'''Nov- 15 We'''<br />
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*'''Nov- 16 Th'''<br />
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*'''Nov- 17 Fr'''<br />
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2023 Week 47<br />
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*'''Nov- 20 Mo'''<br />
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*'''Nov- 21 Tu'''<br />
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*'''Nov- 22 We'''<br />
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*'''Nov- 23 Th'''<br />
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*'''Nov- 24 Fr'''<br />
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2023 Week 48<br />
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*'''Nov- 27 Mo'''<br />
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*'''Nov- 28 Tu'''<br />
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*'''Nov- 29 We'''<br />
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*'''Nov- 30 Th'''<br />
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*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
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*'''Dec- 04 Mo'''<br />
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*'''Dec- 05 Tu'''<br />
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*'''Dec- 06 We'''<br />
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*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
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*'''Dec- 11 Mo'''<br />
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*'''Dec- 12 Tu'''<br />
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*'''Dec- 13 We'''<br />
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*'''Dec- 14 Th'''<br />
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*'''Dec- 15 Fr'''<br />
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2023 Week 51<br />
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*'''Dec- 18 Mo'''<br />
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*'''Dec- 19 Tu'''<br />
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*'''Dec- 20 We'''<br />
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*'''Dec- 21 Th'''<br />
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*'''Dec- 22 Fr'''<br />
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2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
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*'''Dec- 26 Tu'''<br />
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*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=240497Template:Next oroboros ecosystem agenda2023-07-20T14:03:30Z<p>Cecatto Cristiane: </p>
<hr />
<div> 2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME provides an evidence-based index of underweight, overweight and obesity across all heights and ages, in contrast to BMI. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Mitochondrial function abnormalities in patients with heart failure with preserved ejection fraction are associated with exercise intolerance and represent novel therapeutic targets.''' <br><br />
* Scandalis L, Kitzman DW, Nicklas BJ, Lyles M, Brubaker P, Nelson MB, Gordon M, Stone J, Bergstrom J, Neufer PD, Gnaiger E, Molina AJA (2023) Skeletal muscle mitochondrial respiration and exercise intolerance in patients with heart failure with preserved ejection fraction. [[Scandalis 2023 JAMA Cardiol|»Bioblast link«]]<br />
|}<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » '''[[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
----<br />
*'''Aug- 01 Tu'''<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|'''Respiration might be inhibited in the presence of high concentrations of some saccharides due to the Crabtree effect '''<br><br />
It is observed in multiple cell types, such as tumor cells, bacteria or yeast, and it can be measured using SUIT-003 protocols. <br><br />
- »'''[[Crabtree effect]]'''«, »'''[[SUIT-003]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Leo Elettra]]« <br />
|}<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the Goldilocks Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Reducing lipid hydroxides by GPX4 overexpression ameliorates the majority of muscle atrophy and weakness phenotypes present in mouse models of sarcopenia"''' <br><br />
* Czyżowska A, Brown J, Xu H, Sataranatarajan K, Kinter M, Tyrell VJ, O'Donnell VB, Van Remmen H (2023) Elevated phospholipid hydroperoxide glutathione peroxidase (GPX4) expression modulates oxylipin formation and inhibits age-related skeletal muscle atrophy and weakness. [[Czyzowska 2023 Redox Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[US OK Oklahoma City Van Remmen H]]«<br />
|}<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN |FAT4BRAIN]]<br />
|'''"Understanding acylcarnitine metabolic and signaling pathways provides a better rationale for selecting targets for therapeutic interventions."''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
----<br />
*'''Nov- 01 We'''<br />
----<br />
*'''Nov- 02 Th'''<br />
----<br />
*'''Nov- 03 Fr'''<br />
----<br />
2023 Week 45<br />
<br />
*'''Nov- 06 Mo'''<br />
----<br />
*'''Nov- 07 Tu'''<br />
----<br />
*'''Nov- 08 We'''<br />
----<br />
*'''Nov- 09 Th'''<br />
----<br />
*'''Nov- 10 Fr'''<br />
----<br />
2023 Week 46<br />
<br />
*'''Nov- 13 Mo'''<br />
----<br />
*'''Nov- 14 Tu'''<br />
----<br />
*'''Nov- 15 We'''<br />
----<br />
*'''Nov- 16 Th'''<br />
----<br />
*'''Nov- 17 Fr'''<br />
----<br />
2023 Week 47<br />
<br />
*'''Nov- 20 Mo'''<br />
----<br />
*'''Nov- 21 Tu'''<br />
----<br />
*'''Nov- 22 We'''<br />
----<br />
*'''Nov- 23 Th'''<br />
----<br />
*'''Nov- 24 Fr'''<br />
----<br />
2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240496Template talk:Next oroboros ecosystem agenda2023-07-20T14:02:53Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240495Template talk:Next oroboros ecosystem agenda2023-07-20T14:01:52Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN |FAT4BRAIN]]<br />
|'''"Understanding acylcarnitine metabolic and signaling pathways provides a better rationale for selecting targets for therapeutic interventions."''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240488Template talk:Next oroboros ecosystem agenda2023-07-20T07:29:18Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Understanding acylcarnitine metabolic and signaling pathways provides a better rationale for selecting targets for therapeutic interventions."''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240487Template talk:Next oroboros ecosystem agenda2023-07-20T07:28:19Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Understanding acylcarnitine metabolic and signaling pathways provides a better rationale for selecting targets for therapeutic interventions."''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
<br />
<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240486Template talk:Next oroboros ecosystem agenda2023-07-20T07:00:12Z<p>Cecatto Cristiane: /* O2k-Publications alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''""''' <br><br />
* Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. [[Dambrova 2022 Pharmacol Rev|»Bioblast link«]]<br />
:from the O2k-Network »[[LV Riga Liepins E]]«<br />
|}<br />
<br />
<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Dambrova_2022_Pharmacol_Rev&diff=240485Dambrova 2022 Pharmacol Rev2023-07-20T06:54:13Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{Publication<br />
|title=Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. https://doi.org/10.1124/pharmrev.121.000408<br />
|info=[https://pubmed.ncbi.nlm.nih.gov/35710135/ PMID: 35710135] Open Access<br />
|authors=Dambrova Maija, Makrecka-Kuka Marina, Kuka Janis, Vilskersts Reinis, Nordberg Didi, Attwood Misty M, Smesny Stefan, Sen Zumrut Duygu, Guo An Chi, Oler Eponine, Tian Siyang, Zheng Jiamin, Wishart David S, Liepinsh Edgars, Schioth Helgi B<br />
|year=2022<br />
|journal=Pharmacol Rev<br />
|abstract=Acylcarnitines are fatty acid metabolites that play important roles in many cellular energy metabolism pathways. They have historically been used as important diagnostic markers for inborn errors of fatty acid oxidation and are being intensively studied as markers of energy metabolism, deficits in mitochondrial and peroxisomal β -oxidation activity, insulin resistance, and physical activity. Acylcarnitines are increasingly being identified as important indicators in metabolic studies of many diseases, including metabolic disorders, cardiovascular diseases, diabetes, depression, neurologic disorders, and certain cancers. The US Food and Drug Administration-approved drug L-carnitine, along with short-chain acylcarnitines (acetylcarnitine and propionylcarnitine), is now widely used as a dietary supplement. In light of their growing importance, we have undertaken an extensive review of acylcarnitines and provided a detailed description of their identity, nomenclature, classification, biochemistry, pathophysiology, supplementary use, potential drug targets, and clinical trials. We also summarize these updates in the Human Metabolome Database, which now includes information on the structures, chemical formulae, chemical/spectral properties, descriptions, and pathways for 1240 acylcarnitines. This work lays a solid foundation for identifying, characterizing, and understanding acylcarnitines in human biosamples. We also discuss the emerging opportunities for using acylcarnitines as biomarkers and as dietary interventions or supplements for many wide-ranging indications. The opportunity to identify new drug targets involved in controlling acylcarnitine levels is also discussed. SIGNIFICANCE STATEMENT: This review provides a comprehensive overview of acylcarnitines, including their nomenclature, structure and biochemistry, and use as disease biomarkers and pharmaceutical agents. We present updated information contained in the Human Metabolome Database website as well as substantial mapping of the known biochemical pathways associated with acylcarnitines, thereby providing a strong foundation for further clarification of their physiological roles.<br />
|editor=[[Cecatto C]]<br />
|mipnetlab=[LV Riga Liepins E]<br />
}}<br />
{{Labeling<br />
|area=Pharmacology;toxicology<br />
|diseases=Cardiovascular, Diabetes, Inherited<br />
|topics=Fatty acid<br />
|additional=FAT4BRAIN, Publication:FAT4BRAIN<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Dambrova_2022_Pharmacol_Rev&diff=240484Dambrova 2022 Pharmacol Rev2023-07-20T06:53:35Z<p>Cecatto Cristiane: Created page with "{{Publication |title=Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schi..."</p>
<hr />
<div>{{Publication<br />
|title=Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB. (2022) Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. https://doi.org/10.1124/pharmrev.121.000408<br />
|info=[https://pubmed.ncbi.nlm.nih.gov/35710135/ PMID: 35710135] Open Access<br />
|authors=Dambrova Maija, Makrecka-Kuka Marina, Kuka Janis, Vilskersts Reinis, Nordberg Didi, Attwood Misty M, Smesny Stefan, Sen Zumrut Duygu, Guo An Chi, Oler Eponine, Tian Siyang, Zheng Jiamin, Wishart David S, Liepinsh Edgars, Schioth Helgi B<br />
|year=2022<br />
|journal=Pharmacol Rev<br />
|abstract=Acylcarnitines are fatty acid metabolites that play important roles in many cellular energy metabolism pathways. They have historically been used as important diagnostic markers for inborn errors of fatty acid oxidation and are being intensively studied as markers of energy metabolism, deficits in mitochondrial and peroxisomal β -oxidation activity, insulin resistance, and physical activity. Acylcarnitines are increasingly being identified as important indicators in metabolic studies of many diseases, including metabolic disorders, cardiovascular diseases, diabetes, depression, neurologic disorders, and certain cancers. The US Food and Drug Administration-approved drug L-carnitine, along with short-chain acylcarnitines (acetylcarnitine and propionylcarnitine), is now widely used as a dietary supplement. In light of their growing importance, we have undertaken an extensive review of acylcarnitines and provided a detailed description of their identity, nomenclature, classification, biochemistry, pathophysiology, supplementary use, potential drug targets, and clinical trials. We also summarize these updates in the Human Metabolome Database, which now includes information on the structures, chemical formulae, chemical/spectral properties, descriptions, and pathways for 1240 acylcarnitines. This work lays a solid foundation for identifying, characterizing, and understanding acylcarnitines in human biosamples. We also discuss the emerging opportunities for using acylcarnitines as biomarkers and as dietary interventions or supplements for many wide-ranging indications. The opportunity to identify new drug targets involved in controlling acylcarnitine levels is also discussed. SIGNIFICANCE STATEMENT: This review provides a comprehensive overview of acylcarnitines, including their nomenclature, structure and biochemistry, and use as disease biomarkers and pharmaceutical agents. We present updated information contained in the Human Metabolome Database website as well as substantial mapping of the known biochemical pathways associated with acylcarnitines, thereby providing a strong foundation for further clarification of their physiological roles.<br />
|editor=Cecatto C<br />
|mipnetlab=[LV Riga Liepins E]<br />
}}<br />
{{Labeling<br />
|area=Pharmacology;toxicology<br />
|diseases=Cardiovascular, Diabetes, Inherited<br />
|topics=Fatty acid<br />
|additional=FAT4BRAIN, Publication:FAT4BRAIN<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=240479Template:Next oroboros ecosystem agenda2023-07-20T06:27:36Z<p>Cecatto Cristiane: </p>
<hr />
<div> 2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME provides an evidence-based index of underweight, overweight and obesity across all heights and ages, in contrast to BMI. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Mitochondrial function abnormalities in patients with heart failure with preserved ejection fraction are associated with exercise intolerance and represent novel therapeutic targets.''' <br><br />
* Scandalis L, Kitzman DW, Nicklas BJ, Lyles M, Brubaker P, Nelson MB, Gordon M, Stone J, Bergstrom J, Neufer PD, Gnaiger E, Molina AJA (2023) Skeletal muscle mitochondrial respiration and exercise intolerance in patients with heart failure with preserved ejection fraction. [[Scandalis 2023 JAMA Cardiol|»Bioblast link«]]<br />
|}<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » '''[[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
----<br />
*'''Aug- 01 Tu'''<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|'''Respiration might be inhibited in the presence of high concentrations of some saccharides due to the Crabtree effect '''<br><br />
It is observed in multiple cell types, such as tumor cells, bacteria or yeast, and it can be measured using SUIT-003 protocols. <br><br />
- »'''[[Crabtree effect]]'''«, »'''[[SUIT-003]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Leo Elettra]]« <br />
|}<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the Goldilocks Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Reducing lipid hydroxides by GPX4 overexpression ameliorates the majority of muscle atrophy and weakness phenotypes present in mouse models of sarcopenia"''' <br><br />
* Czyżowska A, Brown J, Xu H, Sataranatarajan K, Kinter M, Tyrell VJ, O'Donnell VB, Van Remmen H (2023) Elevated phospholipid hydroperoxide glutathione peroxidase (GPX4) expression modulates oxylipin formation and inhibits age-related skeletal muscle atrophy and weakness. [[Czyzowska 2023 Redox Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[US OK Oklahoma City Van Remmen H]]«<br />
|}<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
----<br />
*'''Nov- 01 We'''<br />
----<br />
*'''Nov- 02 Th'''<br />
----<br />
*'''Nov- 03 Fr'''<br />
----<br />
2023 Week 45<br />
<br />
*'''Nov- 06 Mo'''<br />
----<br />
*'''Nov- 07 Tu'''<br />
----<br />
*'''Nov- 08 We'''<br />
----<br />
*'''Nov- 09 Th'''<br />
----<br />
*'''Nov- 10 Fr'''<br />
----<br />
2023 Week 46<br />
<br />
*'''Nov- 13 Mo'''<br />
----<br />
*'''Nov- 14 Tu'''<br />
----<br />
*'''Nov- 15 We'''<br />
----<br />
*'''Nov- 16 Th'''<br />
----<br />
*'''Nov- 17 Fr'''<br />
----<br />
2023 Week 47<br />
<br />
*'''Nov- 20 Mo'''<br />
----<br />
*'''Nov- 21 Tu'''<br />
----<br />
*'''Nov- 22 We'''<br />
----<br />
*'''Nov- 23 Th'''<br />
----<br />
*'''Nov- 24 Fr'''<br />
----<br />
2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=240477Template:Next oroboros ecosystem agenda2023-07-20T06:25:55Z<p>Cecatto Cristiane: </p>
<hr />
<div> 2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME provides an evidence-based index of underweight, overweight and obesity across all heights and ages, in contrast to BMI. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Mitochondrial function abnormalities in patients with heart failure with preserved ejection fraction are associated with exercise intolerance and represent novel therapeutic targets.''' <br><br />
* Scandalis L, Kitzman DW, Nicklas BJ, Lyles M, Brubaker P, Nelson MB, Gordon M, Stone J, Bergstrom J, Neufer PD, Gnaiger E, Molina AJA (2023) Skeletal muscle mitochondrial respiration and exercise intolerance in patients with heart failure with preserved ejection fraction. [[Scandalis 2023 JAMA Cardiol|»Bioblast link«]]<br />
|}<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » '''[[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
----<br />
*'''Aug- 01 Tu'''<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|'''Respiration might be inhibited in the presence of high concentrations of some saccharides due to the Crabtree effect '''<br><br />
It is observed in multiple cell types, such as tumor cells, bacteria or yeast, and it can be measured using SUIT-003 protocols. <br><br />
- »'''[[Crabtree effect]]'''«, »'''[[SUIT-003]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Leo Elettra]]« <br />
|}<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the Goldilocks Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. https://doi.org/10.1016/j.jbc.2023.102904 [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Reducing lipid hydroxides by GPX4 overexpression ameliorates the majority of muscle atrophy and weakness phenotypes present in mouse models of sarcopenia"''' <br><br />
* Czyżowska A, Brown J, Xu H, Sataranatarajan K, Kinter M, Tyrell VJ, O'Donnell VB, Van Remmen H (2023) Elevated phospholipid hydroperoxide glutathione peroxidase (GPX4) expression modulates oxylipin formation and inhibits age-related skeletal muscle atrophy and weakness. [[Czyzowska 2023 Redox Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[US OK Oklahoma City Van Remmen H]]«<br />
|}<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
----<br />
*'''Nov- 01 We'''<br />
----<br />
*'''Nov- 02 Th'''<br />
----<br />
*'''Nov- 03 Fr'''<br />
----<br />
2023 Week 45<br />
<br />
*'''Nov- 06 Mo'''<br />
----<br />
*'''Nov- 07 Tu'''<br />
----<br />
*'''Nov- 08 We'''<br />
----<br />
*'''Nov- 09 Th'''<br />
----<br />
*'''Nov- 10 Fr'''<br />
----<br />
2023 Week 46<br />
<br />
*'''Nov- 13 Mo'''<br />
----<br />
*'''Nov- 14 Tu'''<br />
----<br />
*'''Nov- 15 We'''<br />
----<br />
*'''Nov- 16 Th'''<br />
----<br />
*'''Nov- 17 Fr'''<br />
----<br />
2023 Week 47<br />
<br />
*'''Nov- 20 Mo'''<br />
----<br />
*'''Nov- 21 Tu'''<br />
----<br />
*'''Nov- 22 We'''<br />
----<br />
*'''Nov- 23 Th'''<br />
----<br />
*'''Nov- 24 Fr'''<br />
----<br />
2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240476Template talk:Next oroboros ecosystem agenda2023-07-20T06:25:18Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=240334Template talk:Next oroboros ecosystem agenda2023-07-14T07:34:10Z<p>Cecatto Cristiane: /* O2k-Publications alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the Goldilocks Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. https://doi.org/10.1016/j.jbc.2023.102904 [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
or<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity by promoting the [...] Ca<sup>2+</sup> “sweet spot” for oxidative phosphorylation activity: neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. https://doi.org/10.1016/j.jbc.2023.102904 [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
or<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Hepatocyte-derived cells maintain cellular and mitochondrial Ca<sup>2+</sup> concentrations within strictly controlled ranges, maximizing electron transport capacity [...] neither too much nor too little, but just right."''' <br><br />
* Vilas-Boas EA, Cabral-Costa JV, Ramos VM, Caldeira da Silva CC, Kowaltowski AJ (2023) Goldilocks calcium concentrations and the regulation of oxidative phosphorylation: too much, too little, or just right. https://doi.org/10.1016/j.jbc.2023.102904 [[Vilas-Boas 2023 J Biol Chem|»Bioblast link«]]<br />
:from the O2k-Network »[[BR Sao Paulo Kowaltowski AJ]]«<br />
|}<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“I really appreciate the amazing customer support of your company.”'''''<br><br />
Jean-Philippe Leduc-Gaudet, PhD from Université du Québec à Trois-Rivières, CA<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Glutamate&diff=239917Glutamate2023-07-04T07:26:48Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{MitoPedia<br />
|abbr=G<br />
|description=[[File:Glutamic_acid.jpg|left|100px|Glutamic acid]]'''Glutamic acid''', C<sub>5</sub>H<sub>9</sub>NO<sub>4</sub>, is an amino acid which occurs under physiological conditions mainly as the anion '''glutamate<sup>-</sup>, G''', with ''p''K<sub>a1</sub> = 2.1, ''p''K<sub>a2</sub> = 4.07 and ''p''K<sub>a3</sub> = 9.47. Glutamate&malate is a substrate combination supporting an N-linked pathway control state, when glutamate is transported into the mt-matrix via the [[glutamate-aspartate carrier]] and reacts with [[oxaloacetate]] in the transaminase reaction to form aspartate and [[oxoglutarate]]. Glutamate as the sole substrate is transported by the electroneutral glutamate<sup>-</sup>/OH<sup>-</sup> exchanger, and is oxidized in the mitochondrial matrix by [[glutamate dehydrogenase]] to α-ketoglutarate ([[oxoglutarate|2-oxoglutarate]]), representing the [[glutamate-anaplerotic pathway control state]]. Ammonia (the byproduct of the reaction) passes freely through the mitochondrial membrane.<br />
|info=[[Gnaiger 2020 BEC MitoPathways]]<br />
}}<br />
<br />
[[File:G.jpg|right|240px|link=Glutamate-anaplerotic pathway control state|G]]<br />
__TOC__<br />
<br />
== Application in [[HRR]] ==<br />
{{Chemical_description<br />
|abbr=G<br />
|trivial name=Glutamate<br />
|complete name=L-Glutamic acid, monosodium salt hydrate<br />
|chem formula=C&#8325;H&#8328;NNaO&#8324; · xH&#8322;O<br />
|molar mass=169.1<br />
|vendor=Sigma-Aldrich<br />
|product number=G1626<br />
|store at=RT<br />
|sensitivity=<br />
|cas=142-47-2<br />
|h statements=<br />
<br />
|h info=<br />
}}<!--::: '''G: Glutamate''' (L-Glutamic acid, monosodium salt hydrate, C<sub>5</sub>H<sub>8</sub>NO<sub>4</sub>Na; contains 1 mol H<sub>2</sub>O /mol); Sigma G 1626, 100 g, store at R.T.; M = 169.1 g·mol<sup>-1</sup>)--><br />
<br />
<br />
:::: '''Preparation of 2 M stock solution''' (dissolved in H<sub>2</sub>O)<br />
<br />
::::# Weigh 1.691 g L-Glutamic acid, monosodium salt hydrate.<br />
::::# Add 4 mL H<sub>2</sub>O.<br />
::::# Check pH and adjust to 7.0 if necessary with 5 M KOH (usually the pH is 7 without any adjustment);<br />
::::# Transfer to a 5 mL volumetric glass flask, adjust final volume to 5 mL and divide into 0.5 mL portions. <br />
::::# Store at -20 °C.<br />
<br />
:::» '''O2k manual titrations''' [[MiPNet09.12 O2k-Titrations]]<br />
<br />
::::* Titration volume ('''2-mL O2k-chamber'''): 10 µL using a 25 µL Hamilton syringe.<br />
::::* Titration volume ('''0.5-mL O2k-chamber'''): 2.5 µL using a 10 µL Hamilton syringe<br />
::::* Final concentration: 10 mM.<br />
{{MitoPedia concepts}}<br />
{{MitoPedia methods}}<br />
{{MitoPedia O2k and high-resolution respirometry}}<br />
{{MitoPedia topics<br />
|mitopedia topic=Substrate and metabolite<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=239656Template:Next oroboros ecosystem agenda2023-06-21T11:55:32Z<p>Cecatto Cristiane: </p>
<hr />
<div><br />
<br />
<br />
2023 Week 26<br />
<br />
*'''Jun- 26 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
----<br />
*'''Jun- 27 Tu'''<br />
----<br />
*'''Jun- 28 We'''<br />
----<br />
*'''Jun- 29 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"This study reinforces the strict aerobic status of ''M. tuberculosis'' and indicates that the therapeutic value of inhibiting the terminal oxidases is relevant even under nano-oxic conditions found in TB [tuberculosis] lung granulomas."''' <br><br />
* Kalia NP, Singh S, Hards K, Cheung CY, Sviriaeva E, Banaei-Esfahani A, Aebersold R, Berney M, Cook GM, Pethe K (2023) ''M. tuberculosis'' relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments. [[Kalia 2023 Cell Rep|»Bioblast link«]]<br />
|}<br />
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*'''Jun- 30 Fr'''<br />
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2023 Week 27<br />
<br />
*'''Jul- 03 Mo'''<br />
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*'''Jul- 04 Tu'''<br />
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*'''Jul- 05 We'''<br />
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*'''Jul- 06 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"G3 MB [Group 3 medulloblastoma] cells demonstrate exquisite sensitivity towards inhibitors of complex-I in the electron transport [system (ETS)] but not to other metabolism-targeting agents, including glycolytic inhibitors."''' <br><br />
* Martell E, Kuzmychova H, Kaul E, Senthil H, Chowdhury SR, Morrison LC, Fresnoza A, Zagozewski J, Venugopal C, Anderson CM, Singh SK, Banerji V, Werbowetski-Ogilvie TE, Sharif T (2023) Metabolism-based targeting of MYC via MPC-SOD2 axis-mediated oxidation promotes cellular differentiation in group 3 medulloblastoma. [[Martell 2023 Nat Commun|»Bioblast link«]]<br />
:from the O2k-Network »[[CA Winnipeg Banerji V]]«<br />
|}<br />
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*'''Jul- 07 Fr'''<br />
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2023 Week 28<br />
<br />
*'''Jul- 10 Mo'''<br />
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*'''Jul- 11 Tu'''<br />
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*'''Jul- 12 We'''<br />
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*'''Jul- 13 Th'''<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Triplefin fish species have different ROS production and electron leakage according to their tolerance to hypoxia.''' <br><br />
* Devaux JBL, Hedges CP, Birch N, Herbert N, Renshaw GMC, Hickey AJR (2023) Electron transfer and ROS production in brain mitochondria of intertidal and subtidal triplefin fish (Tripterygiidae). [[Devaux 2023 J Comp Physiol B|»Bioblast link«]]<br />
|}<br />
<br />
----<br />
*'''Jul- 14 Fr'''<br />
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*'''Jul- 15 Sa'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
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2023 Week 29<br />
<br />
*'''Jul- 17 Mo'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
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*'''Jul- 18 Tu'''<br />
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*'''Jul- 19 We'''<br />
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*'''Jul- 20 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"A cancer-selective Na<sup>+</sup> increase correlated with HCC [hepatocellular carcinoma] cell killing, and a slower growth rate of HCC xenograft tumors."''' <br><br />
* Clemente N, Baroni S, Fiorilla S, Tasso F, Reano S, Borsotti C, Ruggiero MR, Alchera E, Corrazzari M, Walker G, Follenzi A, Crich SG, Carini R (2023) Boosting intracellular sodium selectively kills hepatocarcinoma cells and induces hepatocellular carcinoma tumor shrinkage in mice. [[Clemente 2023 Commun Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[IT Novara Filigheddu N]]«<br />
|}<br />
----<br />
*'''Jul- 21 Fr'''<br />
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*'''Jul- 22 Sa'''<br />
----<br />
*'''Jul- 23 Su''' <br />
:::: [[Image:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
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2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
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2023 Week 31<br />
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2023 Week 32<br />
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2023 Week 34<br />
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2023 Week 35<br />
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2023 Week 36<br />
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2023 Week 37<br />
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*'''Sep- 11 Mo'''<br />
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2023 Week 38<br />
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*'''Sep- 18 Mo'''<br />
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2023 Week 39<br />
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*'''Sep- 25 Mo'''<br />
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*'''Sep- 28 Th'''<br />
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*'''Sep- 29 Fr'''<br />
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2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
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2023 Week 41<br />
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*'''Oct- 09 Mo'''<br />
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*'''Oct- 12 Th'''<br />
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*'''Oct- 13 Fr'''<br />
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2023 Week 42<br />
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*'''Oct- 16 Mo'''<br />
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2023 Week 43<br />
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2023 Week 44<br />
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2023 Week 45<br />
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*'''Nov- 06 Mo'''<br />
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2023 Week 46<br />
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2023 Week 47<br />
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2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239655Template talk:Next oroboros ecosystem agenda2023-06-21T11:55:17Z<p>Cecatto Cristiane: /* O2k-Brief alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » [[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239654Template talk:Next oroboros ecosystem agenda2023-06-21T11:50:40Z<p>Cecatto Cristiane: /* O2k-Brief alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Triplefin fish species have different ROS production and electron leakage according to their tolerance to hypoxia.''' <br><br />
* Devaux JBL, Hedges CP, Birch N, Herbert N, Renshaw GMC, Hickey AJR (2023) Electron transfer and ROS production in brain mitochondria of intertidal and subtidal triplefin fish (Tripterygiidae). [[Devaux 2023 J Comp Physiol B|»Bioblast link«]]<br />
|}<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » [[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239653Template talk:Next oroboros ecosystem agenda2023-06-21T11:36:15Z<p>Cecatto Cristiane: </p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Triplefin fish species have different ROS production and electron leakage according to their tolerance to hypoxia.''' <br><br />
* Devaux JBL, Hedges CP, Birch N, Herbert N, Renshaw GMC, Hickey AJR (2023) Electron transfer and ROS production in brain mitochondria of intertidal and subtidal triplefin fish (Tripterygiidae).. [[Devaux 2023 J Comp Physiol B|»Bioblast link«]]<br />
|}<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » [[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239650Template talk:Next oroboros ecosystem agenda2023-06-21T09:34:03Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
| '''What do you do if values, symbols, and/or units are not correctly displayed in the DatLab software?'''<br><br />
It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings. <br><br />
- » [[DatLab_error_messages#DatLab_error:_problems_with_text_in_DatLab| Troubleshooting for problems with text in DatLab]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Timon-Gomez Alba]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239649Template talk:Next oroboros ecosystem agenda2023-06-21T09:23:59Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Respiratory_complexes&diff=239648Respiratory complexes2023-06-21T09:22:08Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{MitoPedia<br />
|abbr=C''i''<br />
|description='''Respiratory complexes''' are membrane-bound enzymes consisting of several subunits which are involved in energy transduction of the respiratory system. [[Respiratory complexes#Respiratory complexes - more than five |» '''MiPNet article''']]<br />
|info=[[Gnaiger 2020 BEC MitoPathways]]<br />
}}<br />
{{MitoPedia methods<br />
|mitopedia method=Respirometry<br />
}}<br />
{{MitoPedia topics<br />
|mitopedia topic=Enzyme<br />
}}<br />
__TOC__<br />
= Respiratory complexes - more than five =<br />
[[File:Convergent electron transfer.jpg|500px|thumb|File:Convergent electron transfer.jpg|Convergent electron transfer showing the respiratory complexes of the membrane-bound electron transfer pathway (CI to CIV, CGpDH and CETF) and phosphorylation system (CV). From [[Gnaiger 2020 BEC MitoPathways]].]]<br />
{{Publication<br />
|title=Gnaiger E (2014) Respiratory complexes - more than five. Mitochondr Physiol Network 2014-07-07.<br />
|info=[[Gnaiger 2020 BEC MitoPathways]]<br />
|authors=OROBOROS<br />
|year=2014<br />
|journal=MiPNet<br />
|abstract=The 'primary respiratory complexes' (CI to CIV) comprise the machinery for transfer of electrons from NADH and succinate to oxygen as described in an extensive series of publications by the laboratory of Hatefi (see [[Hatefi 1962 J Biol Chem-XLII]]). Complex V (CV) is the [[ATP synthase]] of the [[phosphorylation system]], but the use of CV is discouraged ([[BEC 2020.1]]). Additional respiratory complexes of the membrane-bound [[electron transfer pathway]], such as [[electron-transferring flavoprotein complex|CETF]], [[Glycerophosphate dehydrogenase complex |CGpDH]], and [[choline dehydrogenase]], transfer electrons through the [[Q-junction]] to oxygen ([[Gnaiger 2009 Int J Biochem Cell Biol |Gnaiger 2009]]). <br />
|mipnetlab=AT Innsbruck Gnaiger E<br />
}}<br />
<br />
== Architecture of the respiratory system ==<br />
The different localizations and functions of the respiratory complexes explain the architecture of the respiratory system. Respiratory complexes of the [[electron transfer pathway]] transfer electrons to reduce oxygen to water in aerobic respiration, whereas CV [[ATP synthase]] is part of the [[phosphorylation system]]. Proton translocation couples the electron transfer pathway to the phosphorylation system. <br />
<br />
Membrane-spanning respiratory complexes function as proton pumps (in most mitochondria CI, CIII, CIV and CV; in yeast mitochondria CIII, CIV and CV). Respiratory complexes bound to one side of the inner mt-membrane and CI transfer electrons to the [[Q-junction]] which separates upstream and downstream segments of the electron transfer pathway. Electron transfer complexes localized to the inner face of the inner mt-membrane are CII and CETF, and a respiratory complex localized to the outer face of the inner mt-membrane is CGpDH. <br />
<br />
[[File:Hatefi 1962 NS 2012.jpg|right|500px|Q-junction]]<br />
== Primary complexes and supercomplexes ==<br />
The 'primary complexes' (CI to CIV) comprise the machinery for transfer of electrons from NADH and succinate to oxygen as described in an extensive series of publications by the laboratory of Hatefi (see [[Hatefi 1962 J Biol Chem-XLII]]). Secondary complexes (supercomplexes) and their activities have been described to be stable at repeated freezing, thawing, dilution, centrifugation, and storage at -20 °C. The activity of supercomplexes is representative of electron transfer function in intact mitochondria activated by appropriate substrate combinations. Supercomplexes delineate very clearly the architecture of the respiratory system.<br />
<br />
Whereas Hatefi et al described supercomplexes including CII, currently considered supercomplexes are restricted to CI, CIII and CIV (respirasome), CI and CIII, and CIII and CIV ([[Bianchi 2004 J Biol Chem]], [[Lapuente-Brun 2013 Science]]).<br />
<br />
:» [[O2k-Publications: Q-junction effect]]<br />
<br />
== References ==<br />
{{#ask:[[Additional label::Respiratory complexes]]<br />
| mainlabel=Bioblast link<br />
|?Has title=Reference<br />
|?Was published in year=Year<br />
|format=broadtable<br />
|limit=5000<br />
|offset=0<br />
|sort=Has title<br />
|order=ascending<br />
}}<br />
<br />
{{Labeling<br />
|instruments=Theory<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239647Template talk:Next oroboros ecosystem agenda2023-06-21T09:16:33Z<p>Cecatto Cristiane: /* MitoPedia alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Body mass excess (BME) or body mass index (BMI)? '''<br><br />
BME, in contrast to BMI, provides an evidence-based index of underweight, overweight and obesity across all heights and ages. Try our BME calculator. <br><br />
- »'''[https://bme.oroboros.at/ Body mass excess calculator]'''« and »'''[[Body mass excess]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' The function of mitochondrial respiratory supercomplexes is still under discussion '''<br><br />
Although their structure has been described in different species, their function is still unclear. Come to [[MiPschool Obergurgl 2023|MiPschool 2023]] to find out about the latest discoveries. <br><br />
- »'''[[Respiratory complexes|Respiratory complexes and supercomplexes]]'''« <br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239641Template talk:Next oroboros ecosystem agenda2023-06-21T08:25:18Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
on hold until the page is updated<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239640Template talk:Next oroboros ecosystem agenda2023-06-21T08:25:02Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239639Template talk:Next oroboros ecosystem agenda2023-06-21T08:24:50Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timon-Gomez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239603Template talk:Next oroboros ecosystem agenda2023-06-20T13:54:39Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
::: July 06 -- <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"G3 MB [Group 3 medulloblastoma] cells demonstrate exquisite sensitivity towards inhibitors of complex-I in the electron transport chain (ETC) but not to other metabolism-targeting agents, including glycolytic inhibitors"''' <br><br />
* Martell E, Kuzmychova H, Kaul E, Senthil H, Chowdhury SR, Morrison LC, Fresnoza A, Zagozewski J, Venugopal C, Anderson CM, Singh SK, Banerji V, Werbowetski-Ogilvie TE, Sharif T (2023) Metabolism-based targeting of MYC via MPC-SOD2 axis-mediated oxidation promotes cellular differentiation in group 3 medulloblastoma. [[Martell 2023 Nat Commun|»Bioblast link«]]<br />
:from the O2k-Network »[[CA Winnipeg Banerji V]]«<br />
|}<br />
<br />
::: July 20 -- <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"A cancer-selective Na<sup>+</sup> increase correlated with HCC [hepatocellular carcinoma] cell killing, and a slower growth rate of HCC xenograft tumors"''' <br><br />
* Clemente N, Baroni S, Fiorilla S, Tasso F, Reano S, Borsotti C, Ruggiero MR, Alchera E, Corrazzari M, Walker G, Follenzi A, Crich SG, Carini R (2023) Boosting intracellular sodium selectively kills hepatocarcinoma cells and induces hepatocellular carcinoma tumor shrinkage in mice. [[Clemente 2023 Commun Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[IT Novara Filigheddu N]]«<br />
|}<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timón-Gómez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239593Template talk:Next oroboros ecosystem agenda2023-06-20T11:58:56Z<p>Cecatto Cristiane: </p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
::: July 06 -- <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"G3 MB [Group 3 medulloblastoma] cells demonstrate exquisite sensitivity towards inhibitors of complex-I in the electron transport chain (ETC) but not to other metabolism-targeting agents, including glycolytic inhibitors"''' <br><br />
* Martell E, Kuzmychova H, Kaul E, Senthil H, Chowdhury SR, Morrison LC, Fresnoza A, Zagozewski J, Venugopal C, Anderson CM, Singh SK, Banerji V, Werbowetski-Ogilvie TE, Sharif T (2023) Metabolism-based targeting of MYC via MPC-SOD2 axis-mediated oxidation promotes cellular differentiation in group 3 medulloblastoma. [[Martell 2023 Nat Commun|»Bioblast link«]]<br />
:from the O2k-Network »[[CA Winnipeg Banerji V]]«<br />
|}<br />
<br />
::: July 20 -- <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"A cancer-selective Na+ increase correlated with HCC [hepatocellular carcinoma] cell killing, and a slower growth rate of HCC xenograft tumors"''' <br><br />
* Clemente N, Baroni S, Fiorilla S, Tasso F, Reano S, Borsotti C, Ruggiero MR, Alchera E, Corrazzari M, Walker G, Follenzi A, Crich SG, Carini R (2023) Boosting intracellular sodium selectively kills hepatocarcinoma cells and induces hepatocellular carcinoma tumor shrinkage in mice. [[Clemente 2023 Commun Biol|»Bioblast link«]]<br />
:from the O2k-Network »[[IT Novara Filigheddu N]]«<br />
|}<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Do you want to perform several measurements in one day in the same O2k-chamber?'''<br><br />
To avoid any possible contamination by inhibitors in the subsequent measurements, the O2k-chamber needs to be cleaned each time with the standard protocol AfterUse or AfterUse_inhibitors. <br />
<br><br />
- »'''[[MiPNet19.03 O2k-cleaning and ISS|O2k-cleaning]]'''«<br><br />
- communicated by »[[Timón-Gómez Alba]]« and »[[Cecatto Cristiane]]«<br />
|}<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=MitoPedia:_DatLab&diff=239499MitoPedia: DatLab2023-06-16T08:49:54Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{Technical support}}{{MitoPedia_navigation_line}}<br />
::: '''Welcome at MitoPedia: DatLab'''. Here you find [[O2k-Open Support|'''Oroboros support''']] for DatLab and the '''[[MitoPedia: O2k hardware |O2k]]'''.<br />
<br />
<br />
<big><big>'''List of DatLab menus'''</big></big><br />
__TOC__<br />
<br />
[[File:DatLab-bar.jpg|460px|link=DatLab]]<br />
[[Image:Logo OROBOROS-DatLab.jpg|left|60px||link=http://wiki.oroboros.at/index.php/DatLab |DatLab]]<br />
<big><big>'''[[DatLab installation]]'''</big></big><br />
::::» <big> [[MiPNet21.16 DatLab 7 Innovations]]</big><br />
::::» <big> [[MiPNet26.06 DatLab 7: Guide]]</big><br />
<br />
[[File:File-menu.png|right|150px]]<br />
=== File ===<br />
::::» [[Open DLD file|Open]]<br />
::::» [[Close - DatLab| Close]]<br />
::::» [[Save - DatLab | Save]]<br />
::::» [[Save and Disconnect | Save and disconnect]]<br />
::::» [[Save as - DatLab | Save as]]<br />
::::» [[File search - DatLab| File search]]<br />
::::» [[Delete - DatLab | Delete]]<br />
::::» Import DatLab templates [[DatLab templates]]<br />
::::» Export<br />
:::::* [[Export DL-Protocol User (*.DLPU)]]<br />
:::::* Data to text file: [[Text file - DatLab | Text file]]<br />
:::::* Export - Events to text file: [[Text file - DatLab | Text file]]<br />
:::::* Export - One channel to DatLab 2 analysis: [[DatLab 2]]<br />
::::» Change user: [[User code - DatLab | User]]<br />
::::» Manage users: [[User code - DatLab | User]]<br />
<br />
[[File:O2k-menu.png|right|150px]]<br />
=== Oroboros O2k ===<br />
::::» [[O2k configuration]]<br />
::::» [[O2k channel labels]]<br />
::::» [[O2k control]]<br />
::::» [[Stirrer A on/off]]<br />
::::» [[Stirrer B on/off]]<br />
::::» [[Stirrer test]]<br />
::::» [[Illumination on/off]]<br />
::::» Manage setups: [[Manage setups and templates - DatLab |Manage setups and templates]]<br />
<br />
[[File:TIP2k-menu.png|right|150px]]<br />
=== TIP2k ===<br />
::::» TIP2k control: [[MiPNet12.10 TIP2k-manual|Titration-Injection microPump]]<br />
::::» Manage setups: [[Manage setups and templates - DatLab |Manage setups and templates]]<br />
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[[File:Protocol-menu.png|right|200px]]<br />
=== Protocols ===<br />
<br />
::::» [[Run DL-Protocol/Set O2 limit]]<br />
::::» [[Run_DL-Protocol/Set_O2_limit#Protocol_menu |Show DL-Protocol and Synchronous DL-Protocol events]]<br />
::::» [[Instrumental: Browse DL-Protocols and templates]]<br />
::::» [[SUIT: Browse DL-Protocols and templates]]<br />
::::» [[Install Oroboros protocol package]]<br />
::::» [[MitoPedia: SUIT |Browse www.bioblast.at/index.php./MitoPedia: SUIT]]<br />
::::» [[Enable DL-Protocol editing]]<br />
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[[File:Experiment-menu.png|right|150px]]<br />
=== Experiment ===<br />
::::» [[Sample - DatLab |Sample]]<br />
::::» [[Experimental log - DatLab |Experimental log]]<br />
::::» Add event: [[Events - DatLab |Events]]<br />
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[[File:Calibration-menu.png|right|150px]]<br />
=== Calibration ===<br />
::::» O2: [[O2 calibration - DatLab|O2 calibration]]<br />
::::» Amp: [[Amp calibration - DatLab|Amp calibration]] <br />
::::» pX: [[PX calibration - DatLab|pX calibration]]<br />
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[[File:Flux-Slope-menu.png|right|130px]]<br />
=== Flux / Slope ===<br />
::::» O2: [[Flux / Slope]]<br />
::::» Amp: [[Flux / Slope]]<br />
::::» pX: [[Flux / Slope]]<br />
::::» Proton [[Flux / Slope]]<br />
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[[File:Graph-menu.png|right|150px]]<br />
=== Graph ===<br />
::::» Add graph/Delete bottom graph: [[Add Graph/Delete bottom graph|Add/Delete]]<br />
::::» Select plots: [[Select plots - DatLab]]<br />
::::» Scaling: [[Scaling - DatLab]]<br />
::::» Info: [[Layout_for_DatLab_graphs#Graph / Info|Graph / Info]]<br />
::::» [[Synchronous time axes]]<br />
::::» [[Autoscale]]<br />
:::::* [[Autoscale time axis]]<br />
:::::* [[Autoscale Y1 (Y2) axes]]<br />
:::::* [[Automatic pan]]<br />
::::» Mouse control: [[Mouse control: Mark|Mark]] and [[Mouse control: Zoom|Zoom]]<br />
::::» [[Full screen]]<br />
::::» [[Display numerical value]]<br />
::::» [[Display Power-O2k]]<br />
::::» Options: [[Graph options - DatLab |Graph options]]<br />
::::» [[Copy to clipboard]]<br />
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[[File:Layout-menu.png|right|150px]]<br />
=== Layout ===<br />
::::» Info / Load / Save: [[Layout_for_DatLab_graphs#Layout: Info/ Load/ Safe| Layout: Info/ Load/ Safe]]<br />
::::» Standard layouts - O2k-FluoRespirometer: [[Layout_for_DatLab_graphs#Standard layouts - O2k-FluoRespirometer |Standard layouts - O2k-FluoRespirometer]]<br />
::::» Lab layouts: [[Layout_for_DatLab_graphs#Lab layouts| Lab layouts]]<br />
::::» User: Name: [[Layout_for_DatLab_graphs#User: Name| User: Name]]<br />
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[[File:Marks-menu.png|right|150px]]<br />
=== Marks ===<br />
::::» Edit mark information: [[Marks - DatLab|Marks]]<br />
::::» Statistics: [[Mark statistics - DatLab|Mark statistics]]<br />
::::» Manage mark stat. templates: [[Manage setups and templates - DatLab |Manage setups and templates]]<br />
::::» Specifications: [[Mark specifications - DatLab |Mark specifications]]<br />
::::» Manage mark specifications templates: [[Manage setups and templates - DatLab |Manage setups and templates]]<br />
::::» [[Copy marks]]<br />
<br />
<br />
== DatLab glossary ==<br />
<br />
{{#ask:[[MitoPedia O2k and high-resolution respirometry::DatLab]]<br />
| mainlabel=Term<br />
|?Has abbr=Abbreviation<br />
|?Description=Description<br />
|format=broadtable<br />
|limit=1000<br />
|order=ascending<br />
}}<br />
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<br />
== Further links ==<br />
<br />
::::» [[O2k-Manual#DatLab_manuals |O2k-Manual: DatLab]]<br />
::::» [[O2k-Demo experiments]]<br />
::::» [[DatLab |O2k-Catalogue: DatLab]]<br />
<br />
<br />
::: Related topics<br />
::::» [[MitoPedia: Respirometry|Respirometry]]<br />
::::» [[MitoPedia: Fluorometry|Fluorometry]]<br />
::::» [[MitoPedia: Spectrophotometry|Spectrophotometry]]</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=DatLab_error_messages&diff=239498DatLab error messages2023-06-16T08:49:28Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{Technical support}}<br />
{{MitoPedia without banner<br />
|description=Common '''DatLab error messages''' and according actions and solutions are listed here.<br />
}}<br />
__TOC__<br />
== DatLab error: Connection error ==<br />
[[File:DatLab error messages connection.PNG|border|right|text-top|300px]] This message appears in [[DatLab]] when the software is not able to connect with the [[O2k-Core]].<br />
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=== Actions ===<br />
::::# Check if the O2k is switched on.<br />
::::# Check if the proper communication port was selected and is connected.<br />
::::# Check if there is no other program using the same communication port.<br />
::::# Check if your PC specifications meet the [[DatLab| DatLab minimum requirements]].<br />
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In case of continued failure to connect, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support] <br />
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== DatLab error: Average block temperature over past 10 min has not reached set temperature ==<br />
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[[File:DatLab error messages Peltier 10min.png|border|right|text-top|250px]] This message appears in [[DatLab]] when the [[block temperature]] of the [[O2k-Main Unit]] has not reached the set temperature within the past 10 min.<br />
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=== Actions ===<br />
:::: Click on 'Clear errors' to remove the error message from the [[O2k status line]]. Select 'Layout' > 'Standard layouts' > '01 Calibration show Temp' (including a graph with plots of temperature and Peltier power). The oxygen signal cannot stabilize without temperature stability.<br />
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::::# When cooling from room temperature to a lower temperature (''e.g.,'' 4 °C), it regularly takes more than 10 min for cooling. The error message simply informs the user that a prolonged stabilization time will be required. Delete the [[Event]] with the error message.<br />
::::# When aiming for a low experimental temperature (''i.e.,'' < 6 °C) and the error message is repeatedly shown several times, the room temperature may be too high in relation to the low set temperature, and the Peltier power may be insufficient. Reducing the room temperature may solve the problem.<br />
::::# The [[O2k-Peltier Temperature Control]] may have a temporary connection failure. Switch off the O2k, restart it after a few minutes and connect it to DatLab (with the intended temperature). If the problem persists, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support].<br />
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:::* - ''See'': [[O2k-Peltier_Mitopedia#Block_temperature_does_not_increase_while_heating_with_full_power |O2k open support case]]<br />
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== DatLab error: Block temperature does not increase while heating with full power ==<br />
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[[File:DatLab error messages Peltier power.png|border|right|text-top|250px]] This message appears in [[DatLab]] when the [[block temperature]] of the [[O2k-Main Unit]] has not reached the set temperature despite the application of the Peltier's full power. <br />
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=== Actions ===<br />
:::: Click on 'Clear errors' to remove the error message from the [[O2k status line]]. Select Layout > Standard layouts > 01 Calibration show Temp (including a graph with plots of temperature and Peltier power).<br />
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::::# The [[O2k-Peltier Temperature Control]] may be temporarily disabled. Switch off the O2k, restart it after a few minutes and connect it to DatLab (with the intended temperature). If the problem persists, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support].<br />
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:::* - ''See'': [[O2k-Peltier_Mitopedia#Block_temperature_does_not_increase_while_heating_with_full_power |O2k open support case]]<br />
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== DatLab error: Line has wrong length ==<br />
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[[File:DatLab error messages line.png|border|right|text-top|500px]] This message appears while recording a file with [[DatLab]], when a signal line has not been transmitted properly from the O2k to [[DatLab]]. One or several data points in all plots are missing. The calculated oxygen flux may show a disturbance caused by the missing data point(s).<br />
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=== Actions ===<br />
:::: Click on 'Clear errors' to remove the error message from the [[O2k status line]].<br />
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:::: If this error occurs frequently, then<br />
::::# The [[data recording interval]] may be set to a value that is too low for the capacity of the computer used for recording with DatLab. At a data recording interval of 2 s such error messages should not occur (or only exceptionally). <br />
::::# Too many programs may be active at the same time. Close all unnecessary programs during recording.<br />
::::# The computer may be too slow for processing the signals and handling DatLab. Check if your PC specifications meet the [[DatLab| DatLab minimum requirements]]. A computer upgrade may be necessary.<br />
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== DatLab error: Controller Watchdog Reset was detected. ==<br />
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[[File:DatLab error messages watchdog detected.png|border|right|text-top|250px]] This message appears while recording a file with [[DatLab]], when there is an interruption in the USB-connection and it automatically resets.<br />
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=== Actions ===<br />
:::: Click on 'Clear errors' to remove the error message from the [[O2k status line]].<br />
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:::: If this error occurs frequently, then<br />
::::# Test different USB ports of the PC (this could be caused by a faulty USB port).<br />
::::# Switch on the [[O2k-Main Unit]] only after the USB is connected to the already switched on PC.<br />
::::# Avoid disturbing the USB-connection to the PC during use.<br />
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== DatLab error: Blob cache not released - Native error: 20150 ==<br />
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[[File:DatLab error blob cache not released.png|border|right|text-top|300px]] This message appears at the beginning of recording a file with [[DatLab]], when there is a conflict creating a DLD file. It can be caused by several factors, but with native error 20150 the probable cause is a storage problem (temporarily disconnected or slow network connection) or a virus scanner blocking the DLD file while DatLab is still recording.<br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]]. Restart the program to observe if the problem persists.<br />
::::# Check if your PC specifications meet the [[DatLab| DatLab minimum requirements]]<br />
::::# Check if your your virus scanner is blocking the creation/reading of DLD files.<br />
::::# Check the location of your saved files. It is not recommended to record your files directly to a server since the DLD file is rewritten every time a new data point is collected. This could overload the data traffic of your server.<br />
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:::: If this error occurs frequently, then<br />
::::# The computer may be too slow for processing the signals and handling DatLab. A computer upgrade may be necessary.<br />
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== DatLab error: Zugriffsverletzung bei Adresse 0040551C in Modul 'DatLab7.exe'. Lesen von Adresse 0000003E ==<br />
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[[File:DatLab error messages Zugriffsverletzung.png|border|right|text-top|300px]] This message appears while recording a file with [[DatLab]], when there is a problem with the hardware of the PC, possibly unrelated to DatLab. 'Zugriffsverletzung' or 'General protection fault' can be caused by several factors, unfortunately it is not possible to determine a single cause for this error message.<br />
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:::: Possible causes:<br />
::::# Hardware problems with the PC.<br />
::::# Third-party programs conflicting with DatLab.<br />
::::# Network problem.<br />
::::# Unstable power supply.<br />
::::# Problem in the hardware of the [[Oroboros O2k]] main unit.<br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]]. Restart the program to observe if the problem persists.<br />
::::# Check if your PC specifications meet the [[DatLab| DatLab minimum requirements]]<br />
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In case of continued error message, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support]<br />
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== DatLab error: ROM CRC check failed on following measurement channels: O2L; O2R; AmpL;AmpR;pXL;pXR;==<br />
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[[File:DatLab error ROM CRC check.png|border|right|text-top|250px]] This message appears at the beginning of recording a file with [[DatLab]]. <br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]]. <br />
::::# Check if the channels listed in the error message are being recorded.<br />
::::## If not, restart the program to observe if the problem persists.<br />
::::## If the the channels did not connect, restart the [[O2k-Main Unit]] and [[DatLab]].<br />
::::# Check if your PC specifications meet the [[DatLab| DatLab minimum requirements]]<br />
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In case of continued error message, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support]<br />
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== DatLab error: Komponente mit der Bezeichnung mnSysProtMenu0 existiert bereits. ==<br />
[[File:DatLab error MnSysProtMenu0.png|border|right|text-top|350px]] 'Komponente mit der Bezeichnung mnSysProtMenu0 existiert bereits' or 'Component with the name mnSysProtMenu0 already exists' appears when trying to load instrumental DL-protocols using [[DatLab]].<br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]].<br />
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::::# If restarting DatLab is possible. <br />
::::## Close the program and restart a new file.<br />
::::# If restarting DatLab is '''not''' possible.<br />
::::## When loading a new instrumental DL-Protocol ('Protocols' > 'Run DL-Protocol / Set O2 Limit'), click on SUIT instead;<br />
::::## Load the instrumental DL-Protocol by accessing manually the corresponding folder for the instrumental DL-Protocols. The default location is 'C:\DatLab\DL-Protocols\Instrumental'.<br />
::::## Apply the DL-Protocol to the corresponding chambers.<br />
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== DatLab error: Internal communication error on following measurement channels ==<br />
[[File:DatLab error Internal communication error.png|border|right|text-top|250px]] This message appears in [[DatLab]] when the [[O2k-Main Unit]] is not able to connect with the [[O2k-Core]].<br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]].<br />
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::::# Close the program and switch off the [[O2k-Main Unit]].<br />
::::# Switch on the [[O2k-Main Unit]].<br />
::::# Connect [[DatLab]] and check if the measurement channels are connected.<br />
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In case of continued failure to connect any of the channels, please contact our [https://www.oroboros.at/index.php/o2k-technical-support/ technical support] <br />
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== DatLab error: Cannot read from file ==<br />
[[File:DatLab error cannot read from file.png|border|right|text-top|300px]] This message appears when trying to close a DLD file or closing the [[DatLab]] program. This is caused when there is a temporary connection issue with the file directory. To prevent this error, please avoid recording files in folders that require constant internet connection (such as cloud services or private network servers).<br />
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=== Actions ===<br />
:::: Click on 'Ok' to remove the error message from [[DatLab]].<br />
::::# If you want to save changes made in the DLD file, click on 'Save as...' to save manually select the file directory.<br />
::::# If the message persists, open the Task Manager (Ctrl+Shift+Esc) and click on 'End Task' to forcefully close [[DatLab]].<br />
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== DatLab error: Could not open file ==<br />
[[File:DatLab error could not open file.jpg|border|right|text-top|300px]] This message might appear when the file name contains a special character.<br />
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=== Action ===<br />
:::: Remove all special characters from the file name.<br />
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== DatLab error: problems with text in DatLab ==<br />
[[File:DatLab problem 2020-02-21DL.png|border|right|text-top|700px]] Values, symbols, and/or units may appear incorrectly in the DatLab software (''e.g.,'' ''J''°1 mark name, events/marks names)<br><br />
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=== Action ===<br />
:::: It is possible to retrieve the values, symbols and/or correct units by updating the Windows control panel settings and selecting a language option such as English (United Kingdom) or English (United States). Follow the steps below:<br />
[[File:DatLab problem 2020-02-19-01.jpeg||800px]] <br />
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{{MitoPedia O2k and high-resolution respirometry<br />
|mitopedia O2k and high-resolution respirometry=DatLab<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239458Template talk:Next oroboros ecosystem agenda2023-06-13T09:37:58Z<p>Cecatto Cristiane: </p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
<br />
== MitoPedia alert ==<br />
::: Example:<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center" | [[File:O2k-brief.png|45px|link=http://wiki.oroboros.at/index.php/O2k-brief|O2k-brief repository]]<br />
|'''Antitumoral properties of triterpenic acid functionalized gold nanoparticles arise from decreasing mitochondrial respiration''' <br><br />
* Mioc M, Mioc A, Racoviceanu R, Ghiulai R, Prodea A, Milan A, Barbu Tudoran L, Oprean C, Ivan V, Șoica C (2023) The antimelanoma biological assessment of triterpenic acid functionalized gold nanoparticles. [[Mioc 2023 Molecules|»Bioblast link«]]<br />
|}<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
:::* Example: <br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Mitochondria–nucleus communication and its integration within the maintenance of cellular homeostasis constitute key determinants of cellular fate and organism health in the context of cellular stress, homeostasis perturbation, and disease"''' <br><br />
* Temelie M, Talpur R, Dominguez-Prieto M, Dantas Silva A, Cenusa C, Craciun L, Savu DI, Moisoi N (2023) Impaired integrated stress response and mitochondrial integrity modulate genotoxic stress impact and lower the threshold for immune signalling. [[Temelie 2023 Int J Mol Sci|»Bioblast link«]]<br />
:from the O2k-Network »[[UK Leicester Moisoi N]]«<br />
|}<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
== O2k-Open Support alert ==<br />
:::*Examples:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Yellow-take care.png|25px|Info: take care]]<br />
|'''Does your polarographic oxygen sensor (POS) need a deep clean?'''<br><br />
A POS with a very dark anode might need several rounds of ammonia cleaning, possibly including prolonged exposure overnight to restore performance specifications. <br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »'''[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Unusual stirrer bar rotation? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
- communicated by »[[Baglivo Eleonora]]« and »[[Grings Mateus]]«<br />
|}<br />
<br />
=== Next ===<br />
<br />
== O2k-Feedback alert ==<br />
:::* Example (if the person has a profile, link the name to the profile with [[Cecatto C| Cristiane Cecatto]]:<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from the O2k-Network »[[UK Leicester Moisoi N]]«<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
=== Next ===<br />
<br />
<br />
== MitoFit Preprints ==<br />
:::* Example:<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Next ===<br />
<br />
== Under discussion ==<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
== Removed for correction ==<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=239437Template:Next oroboros ecosystem agenda2023-06-12T09:28:36Z<p>Cecatto Cristiane: </p>
<hr />
<div><br />
<br />
2023 Week 25<br />
<br />
*'''Jun- 19 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 20 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|Decline of mitochondrial fitness in overweight states is a biomarker of the systemic mitObesity syndrome, providing a mechanistic link between common obesity and associated chronic comorbidities. <br><br />
Body mass excess provides an evidence-based index of underweight, overweight and obesity across all heights and ages, applicable to all populations for which the healthy reference baseline is established.<br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Category:BME_and_mitObesity Body mass excess and mitObesity]'''«<br />
|}<br />
----<br />
*'''Jun- 21 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 22 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"BAM15 is a tolerable and efficacious protonophore that protects against diet‐induced obesity."''' <br><br />
* Axelrod CL, King WT, Davuluri G, Noland RC, Hall J, Hull M, Dantas WS, Zunica ER, Alexopoulos SJ, Hoehn KL, Langohr I, Stadler K, Doyle H, Schmidt E, Nieuwoudt S, Fitzgerald K, Pergola K, Fujioka H, Mey JT, Fealy C, Mulya A, Beyl R, Hoppel CL, Kirwan JP (2021) BAM15-mediated mitochondrial uncoupling protects against obesity and improves glycemic control. [[Axelrod 2021 EMBO Mol Med|»Bioblast link«]]<br />
:from the O2k-Network »[[US LA Baton Rouge Noland RC]]« and »[[US OH Cleveland Hoppel CL]]«<br />
|}<br />
----<br />
*'''Jun- 23 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 24 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
2023 Week 26<br />
<br />
*'''Jun- 26 Mo'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
----<br />
*'''Jun- 27 Tu'''<br />
----<br />
*'''Jun- 28 We'''<br />
----<br />
*'''Jun- 29 Th'''<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"This study reinforces the strict aerobic status of M. tuberculosis and indicates that the therapeutic value of inhibiting the terminal oxidases is relevant even under nano-oxic conditions found in TB (tuberculosis) lung granulomas."''' <br><br />
* Kalia NP, Singh S, Hards K, Cheung CY, Sviriaeva E, Banaei-Esfahani A, Aebersold R, Berney M, Cook GM, Pethe K (2023) M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments. [[Kalia 2023 Cell Rep|»Bioblast link«]]<br />
|}<br />
----<br />
*'''Jun- 30 Fr'''<br />
----<br />
2023 Week 27<br />
<br />
*'''Jul- 03 Mo'''<br />
----<br />
*'''Jul- 04 Tu'''<br />
----<br />
*'''Jul- 05 We'''<br />
----<br />
*'''Jul- 06 Th'''<br />
----<br />
*'''Jul- 07 Fr'''<br />
----<br />
2023 Week 28<br />
<br />
*'''Jul- 10 Mo'''<br />
----<br />
*'''Jul- 11 Tu'''<br />
----<br />
*'''Jul- 12 We'''<br />
----<br />
*'''Jul- 13 Th'''<br />
----<br />
*'''Jul- 14 Fr'''<br />
----<br />
*'''Jul- 15 Sa'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
----<br />
2023 Week 29<br />
<br />
*'''Jul- 17 Mo'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
----<br />
*'''Jul- 18 Tu'''<br />
----<br />
*'''Jul- 19 We'''<br />
----<br />
*'''Jul- 20 Th'''<br />
----<br />
*'''Jul- 21 Fr'''<br />
----<br />
*'''Jul- 22 Sa'''<br />
----<br />
*'''Jul- 23 Su''' <br />
:::: [[Image:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
----<br />
*'''Aug- 01 Tu'''<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
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*'''Nov- 01 We'''<br />
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2023 Week 45<br />
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2023 Week 48<br />
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2023 Week 49<br />
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*'''Dec- 05 Tu'''<br />
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*'''Dec- 08 Fr'''<br />
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2023 Week 50<br />
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*'''Dec- 11 Mo'''<br />
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*'''Dec- 12 Tu'''<br />
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*'''Dec- 13 We'''<br />
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2023 Week 51<br />
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*'''Dec- 19 Tu'''<br />
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*'''Dec- 21 Th'''<br />
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*'''Dec- 22 Fr'''<br />
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2023 Week 52<br />
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*'''Dec- 25 Mo'''<br />
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*'''Dec- 26 Tu'''<br />
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*'''Dec- 27 We'''<br />
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*'''Dec- 28 Th'''<br />
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*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=239436Template talk:Next oroboros ecosystem agenda2023-06-12T09:21:44Z<p>Cecatto Cristiane: /* O2k-Open Support alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
Once available<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"Such markers [of mitochondrial function] could help to identify metabolic changes before the disease becomes irreversible and at a stage where therapeutic and lifestyle intervention could be more effective, thus reducing the burden of the health and economic costs of this epidemic."'''<br><br />
* Calabria E, Muollo V, Cavedon V, Capovin T, Saccenti L, Passarotti F, Ghiotto L, Milanese C, Gelati M, Rudi D, Salvagno GL, Lippi G, Tam E, Schena F, Pogliaghi S (2023) Type 2 Diabetes Related Mitochondrial Defects in Peripheral Mononucleated Blood Cells from Overweight Postmenopausal Women. [[Calabria 2023 Biomedicines|»Bioblast link«]]<br />
:from the O2k-Network »[[IT Verona Venturelli M]]«<br />
|}<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Feedback.jpg|60px|link=https://wiki.oroboros.at/index.php/O2k-Feedback |O2k-Feedback]]<br />
|''' ''“Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research”'''''<br><br />
Badr Ibrahim, PhD from Betterhumans Inc., US<br />
<br><br />
- »'''[[O2k-Feedback]]'''«<br><br />
|}<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=More_O2k-Feedback&diff=239435More O2k-Feedback2023-06-12T09:21:32Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{OROBOROS header page name}}<br />
'''Oroboros - Cooperation and Feedback in Science'''<br />
[[Image:O2k-Network.png|right|120px|link=O2k-Network|O2k-Network]]<br />
__TOC__<br />
<br />
== O2k-Feedback 2023 ==<br />
::::* ''Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research'', '''Badr Ibrahim''', Betterhumans Inc., US (2023)<br />
<br />
::::* ''[https://www.miragenews.com/collab-enhances-therapies-for-stiff-heart-965108/ I attended the international Oroboros course on high-resolution respirometry in Innsbruck, Austria, in which I was exposed to new techniques in conducting mitochondrial research. This has helped me stay up-to-date with the latest research in the mitochondria field, which could potentially give rise to new directions in our search for a therapy for HFpEF.]'' '''[[Koay YenChin]]''', O2k-Network Lab [[AU Sydney Kong S]] (2023)<br />
<br />
::: '''Workshop-Feedback 2023'''<br />
::::'''» [[MiPNet28.05 IOC158 Innsbruck AT | IOC158]]'''<br />
<br />
== O2k-Feedback 2022 ==<br />
::::* ''I would like to thank you and the rest of the team at Oroboros once again for your excellent service and getting this module for the O2k sent with such a fast turnaround. I appreciate it so much.'' '''[[Alder Nathan]]''', O2k-Network Lab [[US CT Mansfield Alder N]] (2022)<br />
::::* ''And thank you and all at Orboros for a great conference. It was very well organized with the content to match. Thoroughly enjoyed it.'' '''[[O'Boyle Nial|Nial O'Boyle]]''', UK<br />
::::* ''Great meeting! Glad to be part of it.'' - '''[[Garcia-Roves Pablo Miguel|Pablo Garcia-Roves]]''', ES<br />
::::* ''Thank you very much for the possibility to participate, connect and learn! It was a great experience!'' - '''Incyton GmbH,''' DE<br />
::::* ''Thank you Oroboros Instruments GmbH for organising this inspiring Bioblast 2022 conference.'' - '''[[Lerink Lente|Lente Lerink]]''', NL<br />
::::* ''Very well, and thank you for the privilege to be a virtual participant.''<br />
::::* ''Many thanks for a wonderful conference last week. The program, content and interactions were amazing. I hope you followed up with a successful workshop!'' - '''[[Donnelly Chris|Chris Donnelly]]''', CH<br />
::::* ''With this email I want again to express my gratitude for the possibility to present our results at Bioblast 2022. I feel that this meeting was perfectly organized at a very nice venue with a friendly audience and highly interesting content.'' - '''[[Koopman Werner JH |Werner Koopman]]''', NL<br />
::::* ''Thank you so much for inviting me to the Bioblast2022 meeting. It truly was fabulous. Great science. Great organization. Great personalities. Great accommodation. Great food and drink.'' - '''[[Porter Richard K|Richard Porter]]''', IR<br />
::::* ''Thank you so much for organizing the excellent conference, and the warm reception in Innsbruck. We highly appreciated the opportunity provided to share our observations and the welcomed comments and suggestions. The dinner and company on the Alm was unforgetable. Thank you for that!'' - '''[[Lindeman Jan HN|Jan Lindeman]]''', NL<br />
::::* ''As a result of the wonderful BEC launching conference, I think we should define a regular schedule of meetings to discuss editorial issues of BEC as well as share some ideas to improve the reviewing and publishing system.'' - '''[[Oliveira Marcus F|Marcus Oliveira]]''', BR <br />
::::* ''Thanks for putting on a great meeting and workshop. I was grateful to see everyone in person again and benefit from the years of shared experiences. Open dialogue between investigators and trainees is the best way to move our fields forward.'' - '''[[Irving Brian A|Brian Irving]]''', US<br />
::::* ''I simply wanted to say thanks for your efforts and the warm hospitality during the conference and workshop. The meetings were roaring scientific successes without a doubt, and it was great to see you again!'' - '''[[Hand Steven C|Steven Hand]]''', US <br />
<br />
::: '''Workshop-Feedback 2022'''<br />
::::'''» [[MiPNet27.02 IOC153 Innsbruck AT | IOC153]]<br />
::::'''» [[MiPNet27.03 IOC154 Innsbruck AT|IOC154]]<br />
::::'''» [[MiPNet27.04 IOC155 Schroecken AT|IOC155]]'''<br />
<br />
== O2k-Feedback 2021 ==<br />
::::* ''The video support section describing several aspects of the O2k system is an incredible resource for users, and I would only suggest to add as many videos as possible. Definitively, we felt really comfortable following the videos and, in my opinion, it is one of the best sections in the website for users.'' - '''[[Timon-Gomez Alba]]''', University of Miami Miller School of Medicine, USA (2021)<br />
::::* ''Thanks for helping us get the Oroboros unit. We're enjoying it so much we're considering buying a second unit to increase throughput.'' - '''Christopher Auger''', Beth Israel Deaconess Medical Center, USA<br />
::::* ''The video support describing the technical aspects of operating and servicing the O2Ks are a fantastic resource for users. I have also used the troubleshooting flowchart to diagnose and self-service routine issues. The active user forums and O2k-Network serve as a rich source of protocols, shared knowledge, and information on all topics related to bioenergetics and mitochondria.'' - '''[[Koves TR |Timothy Koves]]''', O2k-Network lab: [[US NC Durham Koves TR]]<br />
::::* ''I provided my .dld files and my doubts were answered fast and clearly.'' - '''[[Tremblay N |Tremblay Nelly ]]''', Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, DE<br />
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== O2k-Feedback 2020 == <br />
::::* ''I would like to thank you for your fast reply and your clear explanations. We followed your advices ; improving the way we were collecting the fibers and oxygenating the medium definitely solved our problems! Thank you for your excellent support!!'' - '''Olivia Zanoletti''', O2k-Network lab: [[CH_Lausanne_Sandi C]]<br />
<br />
::::* ''What I liked the most about the Virtual On-site Visit was the helpful disposition of the Oroboros Team. They made this course possible amidst the current situation (COVID-19).'' - '''Ayelen Melina Santamans Recchini''', Spanish National Centre for Cardiovascular Research (CNIS), Spain<br />
<br />
::::* ''The teachers handling the Virtual On-site Visit were really good. Tips regarding reagents and know-how on situations one can face while carrying out mitochondrial experiments were really useful.'' - '''Ignacio Heras Murillo''', Spanish National Centre for Cardiovascular Research (CNIS), Spain<br />
<br />
::::* ''Our O2ks Rosie and Rupert returned to service today. The best kind of equipment is the reliable, robust, low maintenance kind.'' - '''[[Pietka Terri A | Terri Pietka]]''', O2k-Network lab: [[US MO St Louis Abumrad NA]]<br />
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== O2k-Feedback 2019 == <br />
::::* ''It has been a pleasure to work with your Oxygraph-devices during the last 13 years. Extremely robust machines.'' - '''[[Therkelsen AIb|Therkelsen Arent Ib]]''', O2k-Network Lab: [[DK Copenhagen Quistorff B]]<br />
::::* ''Great workshop! Great, friendly people! It was very educational and enjoyable! It was my pleasure! Thank you!'' - Participant of [[IOC139]]<br />
<br />
::: '''Workshop-Feedback 2019'''<br />
::::'''» [[MiPNet25.03 IOC144 Innsbruck AT | IOC144]]<br />
::::'''» [[MiPNet24.02 IOC141 Schroecken AT| IOC141]]<br />
::::'''» [[MiPNet24.01 IOC139 Schroecken AT| IOC139]]<br />
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<br />
== O2k-Feedback 2018 ==<br />
<br />
::::* ''..., thank you very much for the kind, useful and quick support you provided. Everybody told me in advance how nice and efficient your technical support team was and I have to recognize they were right." - Riccardo Ton, Macquarie University (AU)<br />
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<br />
::: '''Workshop-Feedback 2018'''<br />
::::'''» [[MiPNet23.06_IOC130_Schroecken_AT#Feedback| IOC130]]'''<br />
::::'''» [[MiPNet23.08_IOC134_Schroecken_AT#Feedback| IOC134]]'''<br />
<br />
== O2k-Feedback 2016 ==<br />
<br />
::::* ''We have expanded our use of the O2k for blood based bioenergetic profiling to several studies and I am very impressed with the results.'' - '''[[Molina AJA| Anthony Molina]]''', O2k-Network Lab: [[US NC Winston-Salem Molina AJA]]<br />
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::::* ''Science would be more efficient if the Oroboros philosophy was applied in all domains. Thank you.'' - Participant of [[IOC115]]<br />
<br />
::::* ''I would like to thank the Oroboros-Team for helping us in many discussions regarding the results included in this paper.'' » [[Rodrigues 2015 J Cell Biochem| Bioblast Link]]. - '''[[Amoedo ND| Nivea Amoedo]]''', O2k-Network Lab: [[BR Rio de Janeiro Rumjanek FD]]<br />
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::: '''Workshop-Feedback 2016'''<br />
::::'''» [[MiPNet21.01_IOC109_Schroecken_AT#Feedback|IOC109]]'''<br />
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<br />
== O2k-Feedback 2015 ==<br />
<br />
::::* ''I am really happy that we have a very good working relationship. The Oxygraphs, certainly, helped us get superb results and get our work published in Cell Metabolism. I hope we keep this relationship into the future!'' '''[[Neuzil J| Jirka Neuzil]]''', O2k-Network Lab: [[CZ Prague Neuzil J]]<br />
<br />
::::* ''We are very happy with two Oroboros machines in our experiments and also during teaching in practical courses. High sensitivity of the instrument with a smart software combined with a very nice personal support is an excellent result of the excellent group of Oroboros .'' '''[[Zurmanova J| Jitka Zurmanova]]''', O2k-Network Lab: [[CZ Prague Kalous M]]<br />
<br />
::::* ''(...) we are working with Oroboros every day now, measuring neuronal cells - everything looks perfect! I should have bought it long time ago.'' '''[[Galkin A| Galkin Alexander]]''', Queen's University Belfast (UK)<br />
<br />
::::* ''The Bioblast alert is wonderful!! Thank you so much. I am grateful for your support and for promoting gentle science in all you do.'' '''[[Iyer S| Shilpa Iyer]]''', O2k-Network Lab: [[US VA Richmond Iyer S]]<br />
<br />
::::* ''I love the Oroboros company because you always find good arrangement!!'' '''[[Salin K| Karin Salin]]''', O2k-Network Lab: [[UK Glasgow Metcalfe NB]] <br />
<br />
::::* ''We are huge fans of your instrument :)'' '''[[Kluckova K| Katarina Kluckova]]''', O2k-Network Lab: [[CZ Prague Neuzil J]] <br />
<br />
::::* ''It has been about a year since I have been using the Oxygraph-2k system and I would like to let you know that I am quite happy with the results.'' '''[[Gomez Luis A | Luis Alejandro Gomez]]''', O2k-Network Lab: [[CO Medellin Gomez LA]] <br />
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<br />
::: '''Workshop-Feedback 2015'''<br />
::::'''» [[MiPNet20.01_IOC100#Feedback|IOC100]]'''<br />
<br />
::::'''» [[MiPNet20.05_IOC104_Greenville#Feedback|IOC104]]'''<br />
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::::'''» [[MiPNet20.10_IOC106_Schroecken#Feedback|IOC106]]'''<br />
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<br />
== O2k-Feedback 2014 ==<br />
::::* ''I started enjoying working with OROBOROS. As I am getting familiar, I am able to appreciate its greatness while it’s handling is simple.'' - '''[[Sataranatarajan Kavithalakshmi|Kavithalakshmi Sataranatarajan]]''', O2k-Network Lab: [[US OK Oklahoma City VanRemmen H]].<br />
<br />
::::* ''It was a delight to meet you at UMDF in Pittsburgh and a delight to read your “Blue Book.” As a scientist re-learning mitochondriology, the Blue Book was extremely helpful, as is your Bioblast Glossary. You and OROBOROS are doing a significant service to the scientific community!'' - '''Peter J Oates''' PhD, Sr Director, Research, Stealth Peptides Inc, Newton, MA, USA. Peter.Oates@StealthPeptides.com - www.linkedin.com/oatespj<br />
<br />
::::* ''We are more than happy with the O2k. In fact, it is one of the most useful instruments we have in both our laboratories.'' - '''[[Neuzil Jiri|Jirka Neuzil]]''', O2k-Network Lab: [[CZ Prague Neuzil J]], [[AU Queensland Neuzil J]].<br />
<br />
::::* ''I have been a proud O2k user for the last year and a half, and I and my colleagues have gotten so much use out of our first instrument that we would like to explore the purchase of a second system. Thank you so much for your kind assistance!'' - '''[[Fessel JP|Joshua P Fessel]]''', O2k-Network Lab: [[CZ Prague Neuzil J]], [[US TN Nashville Fessel JP]].<br />
<br />
::::* ''Thank you for the "Blue book"! I was surprised when I found the conference 2013 book with the Blue book [...] and I felt disappointed because I couldn't attend the conference... This book is full of interesting topics, lectures and abstracts!'' - '''Igor Golic''', University of Belgrade, Cell and Tissue Biology Dept, RS.<br />
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<br />
::: '''Workshop-Feedback 2014'''<br />
::::'''» [[MiPNet19.02_IOC88#Feedback |IOC88]]'''<br />
<br />
::::'''» [[MiPNet19.04_IOC89#Feedback |IOC89]]'''<br />
<br />
::::'''» [[MiPNet19.06_IOC91#Feedback |IOC91]]'''<br />
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<br />
== O2k-Feedback 2013 ==<br />
::::* ''Thanks to you and the entire team for your outstanding assistance this year, and moreso for your pleasant friendliness.'' - [[Perry CG|'''Christopher G Perry''']], O2k-Network Lab: [[CA Guelph Holloway GP]].<br />
<br />
::::* ''Thank you very much. I have never worked with a company with this fantastic information system.'' - '''Morales-Alamo D'''.<br />
<br />
::::* ''"High resolution designs (i.e., O2k, Oroboros Instruments) maximize respirometric sensitivity and precision (minimal O2 leak and highly sensitive electrodes), reducing the biological sample size required. Software advances in flux derivations of changes in chamber PO2 also permit real-time reporting of respiratory kinetics (Datlab, Oroboros Instruments), which improves data analyses over other systems requiring visual assessments of steady-state kinetics."'' - '''[[Perry CG|Perry CG]], [[Kane DA|Kane DA]], [[Lanza IR|Lanza IR]], [[Neufer PD|Neufer PD]]''' (2013) Methods for assessing mitochondrial function in diabetes. Diabetes 62: 1041-53. »[[Perry 2013 Diabetes |PMID: 23520284]]. O2k-Network Labs: [[CA Guelph Holloway GP]], [[CA Toronto Perry CG]], [[US NC Greenville Neufer PD]], [[CA Antigonish Kane DA]], [[US MN Rochester Nair KS]].<br />
<br />
::::* ''Thanks again for being so quick with assessing it, repairing and returning the Oxygraph. Working with OROBOROS is so much more superior to working with other companies.'' - [[Sparks LM|'''Lauren M Sparks''']], O2k-Network Lab: [[US FL Orlando Sparks LM]].<br />
<br />
::::* ''Everything what concerns OROBOROS company (oxygraphs, company staff, workshops, conferences, scientific discussions, the quality of information, etc.) works at the highest level !!!!!!! BRAVO for you :)'' - [[Labieniec-Watala M|'''Magdalena Labieniec-Watala''']], O2k-Network Lab: [[PL Lodz Watala C]].<br />
<br />
::::* ''In initial experiments with the Oxygraph-2k we noticed improved sensitivity and stability compared to another polarographic system used by us for many years.'' - [[Fink BD|'''Brian Fink''']], O2k-Network Lab: [[US IA Iowa City Sivitz WI]].<br />
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<br />
::: '''Workshop-Feedback 2013'''<br />
::::'''» [[MiPNet18.02_IOC74 |IOC74]]'''<br />
<br />
::::'''» [[MiPNet18.03_IOC75 |IOC75]]'''<br />
<br />
::::'''» [[MiPNet18.07_IOC78 |IOC79]]'''<br />
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<br />
== O2k-Feedback 2012 ==<br />
<br />
::::* ''I still look back very fondly on the training in Schrőcken [[MiPNet10.08|(IOC31)]].'' - [[Pyne-Geithman GJ|'''Gail Pyne-Geithman''']], O2k-Network Lab: [[US OH Cincinnati Clark JF]].<br />
<br />
::::* ''We very much like your HRR system.'' - [[Shoffner J|'''John Shoffner''']], O2k-Network Lab: [[US GA Atlanta Shoffner J]].<br />
<br />
::::* ''Hi Erich, The O2k works very well since you serviced the sensors. I appreciated it a lot.''- [[Huang S|'''Song Huang''']], O2k-Network Lab: [[CN Beijing Wang X]].<br />
<br />
::::* ''I'm very impressed and love the logo.'' - ''I just have to say it … again, I love your logo.'' - '''Anna Gibson''', MRC National Institute for Medical Research, UK.<br />
<br />
::::* ''Everything goes well for my O2k apparatus.'' - [[Rosenfeld E|'''Eric Rosenfeld''']], O2k-Network Lab: [[FR La Rochelle Rosenfeld E]].<br />
<br />
::::* ''We love our O2k. We have performed measurements in more than 300 muscle biopsies to date, and Paul Coen and I just got a paper accepted in [[Coen 2013 J Gerontol A Biol Sci Med Sci |Journal of Gerontology]] highlighting the measurements related to function in the elderly.'' - '''[[Goodpaster BH|Bret Goodpaster]]''', O2k-Network Lab: [[US PA Pittsburgh Goodpaster BH]].<br />
<br />
::::* ''Our O2ks are working well.'' - '''[[Schauer I|Irene Schauer]]''', O2k-Network Lab: [[US CO Denver Schauer I]].<br />
<br />
::::* ''We are so happy with the performance of our two Oroboros machines that we are considering buying a couple more. We tested permeabilized muscle fibers and liver samples, always obtaining an excellent performance. The resolution of the machines goes largely beyond my most optimistic expectations and, so far, I am very positively impressed with their accuracy and experimental possibilities!'' - '''[[Canto_AC|Carlos Canto]]''', O2k-Network Lab: [[CH Lausanne Canto C]].<br />
<br />
::::* ''We have been using the Oxygraph-2k non stop since you left [[MiPNet17.07 IOC67|Sydney in April]]. It has been working without issue since then. Today for the first time the chamber A is not stable. I assume that the first thing to do is to polish the electrode.'' - '''[[Collinson Emma| Emma Collinson]]''', O2k-Network Lab [[AU Sydney Stocker R]]. <br />
<br />
::::* ''Thank you for creating such a wonderful apparatus, it made my work so much easier and much more fun. Thanks also for a great course in Schroecken in the spring of 2009, unforgettable!'' - '''[[Friederich-Persson Malou| Malou Friedrich-Persson]]''', O2k-Network Lab: [[SE Uppsala Liss P]].<br />
<br />
::::* ''DatLab is a fabulous software - so easy to use.'' - '''[[Palm_F|Palm Frederik]]''' at [[Talk:SE_Uppsala_Liss_P|2nd Innsbruck-Uppsala MiPNet-Workshop]], O2k-Network Lab: [[SE Uppsala Liss P]].<br />
<br />
::::* ''I had not expected that you would send the replacement stoppers before we had sent the others back. This goes above and beyond excellent customer service, you are fantastic!'' - '''[[Hedges C| Christopher Hedges]]''', O2k-Network Lab: [[AU Melbourne Stepto N]].<br />
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<br />
::: '''Workshop-Feedback 2012'''<br />
::::'''» [[MiPNet17.06_IOC66#Feedback |IOC66]]'''<br />
<br />
::::'''» [[MiPNet17.07_IOC67 |IOC67]]'''<br />
<br />
::::'''» [[MiPNet17.08_IOC68#Feedback |IOC68]]'''<br />
<br />
::::'''» [[MiPNet17.14_IOC72 |IOC72]]'''<br />
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<br />
== O2k-Feedback 2011 ==<br />
<br />
::::* ''With my very best wishes of a productive 2012 and keep moving on the Oroboros to new horizons, bringing science, personal and life quality as driving forces to a better world.'' - '''[[Oliveira Marcus F| Marcus F Oliveira]]''', O2k-Network Lab: [[BR Rio de Janeiro Oliveira MF]].<br />
<br />
::::* ''It is great that you develop the Oxygraph-2k in so wonderful directions.. excellent :)))''. - '''[[Labieniec-Watala Magdalena| Magdalena Labieniec-Watala]]''', O2k-Network Lab: [[PL Lodz Watala C]].<br />
<br />
::::* ''I also just want to mention how happy we are with the O2k respirometer we have and want to congratulate you on the success of your O2k systems (not surprisingly, of couse), hence the already booked December workshop''. - '''[[Le Catherine H| Catherine Le H]]''', O2k-Network Lab: [[US CO Fort Collins Chicco AJ]].<br />
<br />
::::* ''The first Oroboros in our lab gave good results. We have plans to purchase a second Oroboros .'' - '''[[Habets Daphna | Daphna Habets]]''', O2k-Network Lab: [[NL Maastricht Bierau J]].<br />
<br />
::::* ''Actually, we are very satisfied with the results that we are producing with the Oxygraph-2k.'' - '''[[Suter Correia Cadena Silvia Maria | Silvia Maria Suter Correia Cadena]]''', Curitiba, Paraná, Brasil.<br />
<br />
::::* ''We are really satisfied with the O2k and we hope to measure mitochondrial membrane potential ASAP.'' - '''[[Djafarzadeh Siamak | Siamak Djafarzadeh]]''', O2k-Network Lab: [[CH Bern Djafarzadeh S]].<br />
<br />
::::* ''Thank you for developing the Oxygraph, it has proved to be an excellent tool and we look forward to upgrading in the near future.'' - '''[[Gourlay Campbell W | Campbell W Gourlay]]''', O2k-Network Lab: [[UK Canterbury Gourlay CW]].<br />
<br />
::::* ''Our two Oroboros machines function perfectly, and I have put in a grant for a third machine''. - '''[[Lundby Carsten | Carsten Lundby]]''', O2k-Network Lab: [[CH Zurich Lundby C]].<br />
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::: '''Workshop-Feedback 2011'''<br />
<br />
::::'''» [[MiPNet16.01_IOC61|IOC61]]'''<br />
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== O2k-Feedback 2010 ==<br />
<br />
::::* ''Our O2k runs without problems.'' - '''[[Burgstaller Wolfgang|Wolfgang Burgstaller]]''', O2k-Network Lab: [[AT Innsbruck Burgstaller W]].<br />
<br />
::::* ''I was participating last summer in WorldPharma 2010 congress in Copenhagen and heard a fantastic presentation given by Professor Sir Salvador Moncada about mitochondrial function measured by Oroboros Oxygraph.'' - '''[[Mervaala Eero|Eero Mervaala]]''', O2k-Network Lab: [[FI Helsinki Mervaala E]].<br />
<br />
::::* ''Our project is now accepted by the French polar institute (IPEV) and we plan to install a respirometry system in Antarctica! I already worked on the Oroboros in my previous laboratory in Canada and, to my opinion, it’s the best and more accurate system for our project.'' - '''[[Romestaing Caroline|Caroline Romestaing]]''', O2k-Network Lab: [[FI Helsinki Mervaala E]].<br />
<br />
::::* ''Recently Doug Crawford here in Miami let me use his O2k and it was great.'' - '''[[Moraes Carlos T|Carlos T Moraes]]''', O2k-Network Lab: [[US FL Miami Moraes CT]].<br />
<br />
::::* ''The two recently acquired Oxygraphs are now installed and running smoothly. I am very pleased with the new version of Datlab, even though I have not yet had occasion to try out all of the new options added to it.'' - '''[[Therkelsen_AIb|Ib Therkelsen Arent]]''', O2k-Network Lab: [[DK Copenhagen Quistorff B]].<br />
<br />
::::* ''We´re very happy with our three O2k's here at Karolinska Institute.'' - '''[[Larsen Filip J|Filip J Larsen]]''', O2k-Network Lab: [[SE Stockholm Weitzberg E]].<br />
<br />
::::* ''Happy new year to you and the fantastic Oroboros team! The Oxygraph-2k is working like a dream.'' - '''[[Phung Vinh Thanh|Vinh T Phung]]''', O2k-Network Lab: [[NO As Egelandsdal B]].<br />
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== O2k-Feedback 2009 ==<br />
<br />
::::* ''I already start to use this wonderfull instrument. It works really well now!'' - '''[[Mourier A| Arnaud Mourier]]''', O2k-Network Lab: [[DE Cologne Larsson NG]].<br />
<br />
::::* ''I came across your website and found excellent information for instrumentation, protocols and solutions.'' - '''[[Dworetzky S|Steven Dworetzky]]''', Knopp Neurosciences, Pittsburgh, PA, USA.<br />
<br />
::::* ''.. we are very impressed with the instrument ..'' - '''[[Falk Marni J|Marni J Falk]]''', O2k-Network Lab: [[US PA Philadelphia Falk MJ]].<br />
<br />
::::* '' ... For an independent perspective on the Oroboros Oxygraph-2k, we think they are fantastic, fullstop. We have had no real issues in almost four years. I started with the general system which requires water baths etc and really it was baptism of fire, and when we got the Oroboros -O2k it was a different world. Our only issue now is we need more of them now. Perhaps the best part of our dealings with Oroboros is Erich's groups outstanding efforts to provide detailed methods and protocols for both the machines and experiments. ...'' - '''[[Hickey Anthony JR|Anthony JR Hickey]]''', O2k-Network Lab: [[NZ Auckland Hickey AJ]].<br />
<br />
::::* '' ... regarding the Seahorse ... they were adament that their instrument was useful for quantitative measurements, even though the vast majority of the data was expressed as fold-change, or % control. In the end, they said that their system was more complimentary to existing oxygraphs, and even suggested that the Seahorse be used for optimization experiments to determine the best conditions for O2k experiments.'' - '''[[Kane DA|Daniel A Kane]]''' O2k-Network Lab: [[CA Antigonish Kane DA]], [[US NC Greenville Neufer PD]].<br />
<br />
::::* ''First of all I would like to write that O2K works very well in our lab as well.'' - '''[[Tretter Laszlo|Laszlo Tretter]]''', O2k-Network Lab: [[HU Budapest Tretter L]].<br />
<br />
::::* ''First of all I´d like to say that I´m very happy with the O2k system. I have used it quite a lot lately, mainly doing phosphorylation control titrations with intact podocytes and I have not have any problems, except for a few small ones relating to software.'' - '''[[Miinalainen IJ|Ilkka J Miinalainen]]''', O2k-Network Lab: [[IE Dublin Miinalainen I]].<br />
<br />
::::* ''We continue to "spread the word" about the Oroboros with our colleagues at meetings and conferences. As with all quality products, I'm not surprised to hear that demand is steady, even in the face of economic hardships. Yours has the added benefit of sophisticated science and precision manufacturing, which exponentially increases its value. Darrell Neufer and I have a big paper being published in JCI on this upcoming Monday (on-line first). There is Oroboros data all over it. Many more papers are currently being written, as we've been using our O2k's at maximal capacity for the past two years! Would it be possible for you to send a small stack of your "Blue Book of Mitochondria" with the new O2k? It's really an invaluable resource for students and new people that join the lab.'' - '''[[Anderson Ethan J|Ethan J Anderson]]''', O2k-Network Lab: [[US NC Greenville Anderson EJ]], [[US NC Greenville Neufer PD]].<br />
<br />
::::* ''Since the two Oroboros installed here are fully operational (in fact it has been a great success!), the demand for their use has increased susbtantially. Therefore, we are intending to purchase another one.'' - '''[[Oliveira Marcus F|Marcus F Oliveira]]''', O2k-Network Lab: [[BR Rio de Janeiro Oliveira MF]].<br />
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<br />
== O2k-Feedback 2008 ==<br />
<br />
::::* ''I thought you might be interested to know more about my research and my success stories using your Oroboros . I investigated mitochondrial capacity in cardiac muscle fibers of a common model of dietary-induced insulin resistance mice and successfully presented parts of my results at the 2008 Annual Obesity Meeting, Phoenix, Arizona. I received so many positive feedbacks on my study. I am planning on developing my area of research from animals to humans, if it would be possible. I am very proud of what I have achieved during the last year. Starting with basic knowledge about mitochondria and Oroboros , I have been able to find my way through the mitochondria respiratory world. This achievement wouldn’t be possible without your help and support.'' - '''[[Zadeh ZE|Zahra E Zadeh]]''', O2k-Network Lab: [[CA Montreal Hepple RT]].<br />
<br />
::::* ''The assemblage and tests of O2K have been finished and some trials have been conducted for TCM research.'' - '''Canghai Li''' PhD, China Academy of Chinese Medical Sciences, Beijing, P.R.China.<br />
<br />
::::* ''The second O2K works perfectly. It will really help us to develop more quickly applied respirometry on muscle cell culture and biopsies.'' - '''[[Votion DM|Dominique Votion]]''', O2k-Network Lab: [[BE Liege Votion DM]].<br />
<br />
::::* ''I have several papers in the pipeline that utilize respiration as our primary variable. The Oxygraph-2k was one of the best investments I ever made.'' - '''[[Keeney P|Paula Keeney]]''', O2k-Network Lab: [[US VA Richmond Bennett JP]].<br />
<br />
::::* ''The results with the lymphocytes cells are excellent with MiR05 and really better than with the other medium (more stability and higher values).'' - '''[[Rhein V|Virginie Rhein]]''', O2k-Network Lab: [[CH Basel Eckert A]].<br />
<br />
::::* ''I have been studying respiration in cells and in animals, and plan to include mitochondria. Your website will be a valuable resource. My students will find it interesting.'' - '''Dennis G Searcy''' PhD, Professor of Biology, University of Massachusetts, MA, USA.<br />
<br />
::::* ''SUPERSATISFIED!'' - '''[[Elmer E|Eskil Elmér]]''', O2k-Network Lab: [[SE Lund Elmer E]].<br />
<br />
::::* ''Our Oroboros Oxygraph is in almost daily use and we are very pleased with the data it produces.'' - '''[[Keeney P|Paula Keeney]]''', O2k-Network Lab: [[US VA Richmond Bennett JP]].<br />
<br />
::::* ''Our new O2k started up perfectly. The new software is fantastic too.'' - '''[[Hickey Anthony JR|Anthony JR Hickey]]''', O2k-Network Lab: [[NZ Auckland Hickey AJ]].<br />
<br />
::::* ''I would like to congratulate the Oroboros team for the software that really works beautifully. People who did it are really clever (know how someone using an oxygraph works).'' - '''[[Bouillaud Frederic|Frédérick Bouillaud]]''', O2k-Network Lab: [[FR Paris Bouillaud F]].<br />
<br />
::::* ''People are getting really happy with the Oroboros ... the instrument is working remarkably well so far.'' - '''[[Radi R|Rafael Radi]]''', O2k-Network Lab: [[UY Montevideo Radi R]].<br />
<br />
::::* ''.. we tested a few techniques using the O2K. I really enjoyed working with the instrument and so far I am very happy with it.'' - '''[[Darveau CA|Charles-A Darveau]]''', O2k-Network Lab: [[CA Ottawa Darveau CA]].<br />
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== O2k-Feedback 2007 ==<br />
<br />
::::* ''.. feedback about the O2K. I am very impressed. The last 3 years I've done many expts. on mito respiration in permeabilized fibers using a Hansatech electrode, which worked fine and was suitable for our needs at the time. But I equate going from that system to the O2K to starting with a Honda Accord and going to an Infiniti or a Mercedes C-class. Once you've had a taste of high-performance, there's no going back. :)'' - '''[[Anderson Ethan J|Ethan J Anderson]]''', O2k-Network Lab: [[US NC Greenville Anderson EJ]], [[US NC Greenville Neufer PD]].<br />
<br />
::::* ''We are loving work with the Oroboros-O2k, despite we were not using all possibilities yet. But, step by step...'' - '''[[Galina A|Antonio Galina]]''', O2k-Network Lab: [[BR Rio de Janeiro Galina A]], [[BR Rio de Janeiro Institute Biomedical Chemistry]].<br />
<br />
::::* ''Our Oxygraph-2k is in daily use and is a truly wonderful instrument. I may be forced to buy a second one. - I am very interested in the TPP+ electrode development. Please keep us in mind as a potential "beta" testing site.'' - '''[[Bennett James P|James P Bennett]]''' O2k-Network Lab: [[US VA Richmond Bennett JP]], [[US VA Richmond Iyer S]].<br />
<br />
::::* ''I have been working with CS using your protocol (Laboratory Protocol Citrate Synthase), which I found to be extremely helpful and very well-written. Thank you, very good job!'' - Nikolai Chepelev MSc, Biology Student, Carleton University, Ottawa, Canada.<br />
<br />
::::* ''Your web page provides the clearest, most concise explanations I have ever read on why mitochondrial substrates are used as they are (glutamate, malate, etc...).'' - Florian L. Muller PhD., Dept of Cell and Structural Biology, University of Texas Health Science Center, San Antonio, TX, USA.<br />
<br />
::::* ''We had no problems with installation of the Oxygraph-2k.'' - '''[[Douay O|Olivier Douay]]''', O2k-Network Lab: [[FR Angers Gueguen N]].<br />
<br />
::::* ''The O2k arrived Friday last week in excellent condition, IT IS A BEAUTY! We have installed the software and set up the electrodes and everything seems to work nicely.'' - '''[[Elmer E|Eskil Elmér]]''', O2k-Network Lab: [[SE Lund Elmer E]].<br />
<br />
<br />
== O2k-Feedback 2006 ==<br />
<br />
::::* See also O2k-course IOC32-Feedback.<br />
<br />
::::* ''We are working hard with the excellent Oxygraph-2k. .. I am spreading the good news about your perfect oxygraph. I've made a collegue of mine enthusiastic, ...'' - '''[[Sluiter W|Willem Sluiter]]''', O2k-Network Lab: [[NL Rotterdam Sluiter W]].<br />
<br />
::::* ''Concerning our three Oxygraph-2k, they are all running smoothly like Swiss clocks (Austrian clocks, if you like...). My college, Morten, who also joined the IOC32 in April 2006, has been using the instruments almost every day through the entire summer for some permeabilised muscle experiments. He reports that all three have been pleasantly stable and well-behaven, and that electrode-membrane replacements have been rare. Only weak spot seems to be the cable connection in the bottom of the electrode holder. The cable does not like to be touched, bent, or moved about during data acquisition. Some stabilisation of the cable entry into the electrode holder might possibly be a point for improvement in later generation design. Last week of August, we took the three instruments to the nearby veterinarian school in order to perform measurements on 40 biopsies from sheep. Those were busy days for all three persons involved, but also quite satisfactory, as there was not a single mishap with either samples or machines. As to the Savitzky-Golay filter [Oxygen Flux and Time Resolution] and two second sampling intervals, we have found that for all experiments performed in our lab up until now, we never needed to do it any differently. We have not yet had the need for rapid transition measurements, but we have tried, once, to run the data acquisition at full pelt, just for the fun of it.'' - '''[[Therkelsen_AIb|Ib Therkelsen Arent]]''', O2k-Network Lab: [[DK Copenhagen Quistorff B]].<br />
<br />
::::* ''... Now my Ok2 is operating soooooooooo well, and the problem of analysis of the mito data has been solved successfully as you said me [Oxygen Flux and Time Resolution]. I reduced the mitochondrial concentration (from 0.5 to 0.3 mg protein/ml ) and I´ve reduced the data recording interval to the minimum of 0.2 s too. After ADP additon the slope increases sharply and returns to state 4 with similar values to State 2 ones, resulting in a higher RCR.'' - '''[[Lopez A|Ana López Ramírez]]''', O2k-Network Lab: [[ES Granada Acuna-Castroviejo D]].<br />
<br />
::::* ''Yes the machine is working well. Very well actually. Took a bit of trial and error with the electrolyte, as our water here is full of metal ions. Distilled water did the job.'' - '''[[Hickey Anthony JR|Anthony JR Hickey]]''', O2k-Network Lab: [[NZ Auckland Hickey AJ]].<br />
<br />
::::* ''We are delighted with our O2k! It is obviously a very sensitive piece of equipment and the DatLab software makes using it very easy. The respiratory state of our cell lines will be important information for our group. I must be honest though, with no background in respirometry or with the O2k, I would have been lost without all the very helpful instruction I received in Shrocken. Thank you for making our use of this fine machine possible!'' - '''[[Keeney P|Paula Keeney]]''', O2k-Network Lab: [[US VA Richmond Bennett JP]].<br />
<br />
::::* ''Here we are! We received the Oxygraph-2k on wednesday, we tested it for two days and it workes very well! Great!'' - '''[[Carmona OMC|Mamen Carmona]]''', O2k-Network Lab: [[ES Barcelona Gomis R]], [[FR Toulouse Casteilla L]].<br />
<br />
::::* The following review of one of your products has been left by a SelectScience.net member:<br />
::::::Product: Oxygraph-2k, Ease of use: 5 (top rating), After sales: 5 (top rating), Value for money: 5 (top rating), Overall: 5.0 (top rating) <br />
::::::Comment: ''Easy to use, with a user-friendly interface. Online results are great!'' - '''[[Rabol R|Rasmus Rabol]]''' O2k-Network Lab: [[DK Copenhagen Dela F]].<br />
<br />
<br />
== O2k-Feedback 2005 ==<br />
<br />
::::* On respirometry with permeabilized muscle fibres: ''.. thanks for your help and lifesaving website and info''. - '''[[Hickey Anthony JR|Anthony JR Hickey]]''', O2k-Network Lab: [[NZ Auckland Hickey AJ]].<br />
<br />
::::* ''Getting Oroboros was a natural choice.'' - '''[[Lee HK|Hong Kyu Lee]]''', Seoul National University Hospital, South Korea.<br />
<br />
::::* ''We have an Oroboros -2k which is a perfect machine. On the web-site you will find all material relevant to this machine, including mito isolation protocols and an estimate of the amount of tissue needed. The Oroboros simultaneously runs respirometry in 2 two ml chambers. The large volume is advantageous as this implies your mitos can respire for quite a while without running out of oxygen. As the sensors are fairly sensitive and stable you do not really need much tissue. ... you may consider to run the assays not on isolated mitos but on permeabilized cardiomyocytes (we run analyses on permeabilized muscle biopsies ..). The advantage is that this may need less tissue; .. the machine can do wonderful things. If you decide to buy one I can certainly advise you to run the course Erich offers as it is by far the best way to get some feeling of what can be achieved with the machine.'' - '''[[Hesselink M|Matthijs Hesselink]]''', O2k-Network Lab: [[NL Maastricht Schrauwen P]].<br />
<br />
::::* ''The perspectives of working with the Oroboros Oxygraph-2k on human tissue are enormous.'' - '''[[Dela F|Flemming Dela]]''', O2k-Network Lab: [[DK Copenhagen Dela F]].<br />
<br />
::::* ''It is a pleasure to give you the permission to list our lab as an Oroboros 'Mitochondrial Physiology Network Laboratory'. I do think this kind of network will be very useful for us.'' - '''[[Lefaucheur L|Louis Lefaucheur]]''', O2k-Network Lab: [[FR Saint Gilles Lefaucheur L]].<br />
<br />
::::* ''Polarography is a technique that we have been using routinely in the lab for mitochondrial research or the diagnosis of mitochondrial diseases, and so far the Oroboros Oxygraph is the best in terms of sensitivity and reproducibility. Respiratory studies with cells give good results with about 5 10E5 cells/ml , and depending on the cell type you can go down to 1E5. We used primary myoblasts, keratinocytes, lymphocytes and a variety or cancer cells, permeabilized or not. You can also utilize permeabilized muscle fibers of about 3 mg each. The good point is that you can measure the oxygen consumption of the electrode (noise) and the oxygen diffusion inside the machine in a pre-experiment, that you remove from your respiration data. For kinetic studies you can also take into account the time constant response of the electrode (that increases with time) that can also be measured. What must be pointed out, is that this Oxygraph is the only one that allows to work at very low (physiological and even hypoxic) oxygen concentrations, what cannot be performed with classic systems that are not oxygen-proof enough. Also, the software is powerful and the new version more user-friendly as older versions. Recently, this company developed a new stopper that allows to fit in electrodes or optic fibers that allow to measure bioenergetic or cellular parameters concomitantly to oxygen consumption rate.'' - '''[[Rossignol R|Rodrigue Rossignol]]''' O2k-Network Lab: [[FR Bordeaux Rossignol R]].<br />
<br />
::::* ''I have been working with the Oroboros Oxygraph-2k since two years now, and concerning the sensitivity I can say, that I obtained reliable results even with cell numbers of about 0.1 Mill cells/ml, which would correspond to a cellular protein concentration of about 0.3 mg/ml.'' - '''[[Huetter E|Evi Hütter]]''' O2k-Network Lab: [[AT Innsbruck Jansen-Duerr P]].<br />
<br />
::::* ''I have been using the Oxygraph-2k for two years and due to its sensitivity I can use it to measure the respiration of intact fibroblasts from one 75 sq.cm culture flask - that could be like 0.2 mg/ml of protein and I guess it might be possible to go even lower with the protein concentration. With isolated mitochondria, measurements at 0.025 mg/ml are feasible. I must say I am very satisfied with the instrument, but frankly I have never used any other oxygen electrode so my opinion is not unbiased.'' - '''[[Pecina P|Petr Pecina]]''' O2k-Network Lab: [[CZ Prague Houstek J]].<br />
<br />
<br />
== O2k-Feedback 2004 ==<br />
<br />
::::* ''Your new machine is amazingly confortable to work with. Time constants are really good and the new software used to drive the machine is more convenient than the previous DatLab 2 acquisition program ! We have very nice results on skinned fibers from pig or rat heart. Signals and biological samples are really stable over a large time scale, which is needed to perform accurate ADP titrations. We would like to buy another Oroboros Oxygraph 2k. This would allow two persons of the lab to perform large scale and simultaneous studies on isolated mitochondria, myocardic cells and skinned fibers.'' - '''[[Beauvoit B|Bertrand Beauvoit]]''' O2k-Network Lab: [[FR Pessac Diolez P]].<br />
<br />
::::* ''This is to express our sincere gratitude for the course last weekend. We found the course highly instructive and fruitful and have enjoyed the relaxed atmosphere very much.'' - '''[[Hesselink M|Matthijs Hesselink]]''', O2k-Network Lab: [[NL Maastricht Schrauwen P]].<br />
<br />
::::* ''The Oroboros precision for O2 concentration measurements is 0.036 microM against 0.500 to 1.000 microM for other commercial instruments.'' - '''[[Gregori G|Gérald Grégori]]''', '''[[Denis M|Michel J Denis]]''', '''[[Lefevre D|Dominique Lefevre]]''', '''[[Beker B|Beatiz Beker]]''' O2k-Network Lab: [[FR Marseille Gregori G]].<br />
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<br />
<br />
== O2k-Feedback 2003 ==<br />
<br />
::::* ''Hello Erich: The O2k-Workshop was again exquisite and informative, and your knowledge begs those who yearn to learn. Interesting how many ideas within the talent of those gathered, young and senior, create an atmosphere for discovery. Also, thank you for all your altruistic help with my projects.'' - '''[[Boushel RC|Robert C Boushel]]''', O2k-Network Lab: [[CA Montreal Bergdahl A]], [[DK Copenhagen Dela F]], [[SE Stockholm Boushel RC]].<br />
<br />
<br />
== O2k-Feedback highlights ==<br />
<br />
::::* Highlights »[[O2k-Feedback]]</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=O2k-Feedback&diff=239434O2k-Feedback2023-06-12T09:21:17Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{OROBOROS header page name}}<br />
{{Template:OROBOROS Slogan}} <big>'''- cooperation and feedback in science'''</big><br />
[[Image:O2k-Feedback.jpg|right|200px|O2k-Feedback]]<br />
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__TOC__<br />
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<br />
:::: We thank you for your positive feedback. This is the energy that fuels our developments and encourages us to strive towards further optimization and innovation, along the lines and cycles of the [http://www.oroboros.at/?oroboros-logo Oroboros], in the spirit of [[Gentle Science]]. Thank you for your collaboration! - [https://www.oroboros.at/index.php/about-us/team/ The Oroboros-Team] <br />
<br />
== O2k-Feedback highlights ==<br />
::::* ''Thank you very much for your thorough help. I appreciate the time you took to provide me with all the answers and supportive literature to realize the potential of the O2k-respirometer in bioenergetics research'', '''Badr Ibrahim''', Betterhumans Inc., US (2023)<br />
<br />
::::* ''[https://www.miragenews.com/collab-enhances-therapies-for-stiff-heart-965108/ I attended the international Oroboros course on high-resolution respirometry in Innsbruck, Austria, in which I was exposed to new techniques in conducting mitochondrial research. This has helped me stay up-to-date with the latest research in the mitochondria field, which could potentially give rise to new directions in our search for a therapy for HFpEF.]'' '''[[Koay YenChin]]''', O2k-Network Lab [[AU Sydney Kong S]] (2023)<br />
<br />
::::* ''I would like to thank you and the rest of the team at Oroboros once again for your excellent service and getting this module for the O2k sent with such a fast turnaround. I appreciate it so much.'' '''[[Alder Nathan]]''', O2k-Network Lab [[US CT Mansfield Alder N]] (2022)<br />
<br />
::::* ''Thank you so much for inviting me to the Bioblast2022 meeting. It truly was fabulous. Great science. Great organization. Great personalities. Great accommodation. Great food and drink.'' '''[[Porter Richard K|Richard Porter]]''', Trinity Biomedical Sciences Institute , IE (2022)<br />
<br />
::::* ''The video support section describing several aspects of the O2k system is an incredible resource for users, and I would only suggest to add as many videos as possible. Definitively, we felt really comfortable following the videos and, in my opinion, it is one of the best sections in the website for users.'' - '''[[Timon-Gomez Alba]]''', University of Miami Miller School of Medicine, USA (2021)<br />
<br />
::::* ''Thanks for helping us get the Oroboros unit. We're enjoying it so much we're considering buying a second unit to increase throughput.'' - '''Christopher Auger''', Beth Israel Deaconess Medical Center, USA (2021)<br />
<br />
::::* ''The video support describing the technical aspects of operating and servicing the O2Ks are a fantastic resource for users. I have also used the troubleshooting flowchart to diagnose and self-service routine issues. The active user forums and O2k-Network serve as a rich source of protocols, shared knowledge, and information on all topics related to bioenergetics and mitochondria.'' - '''[[Koves TR |Timothy Koves]]''', O2k-Network lab: [[US NC Durham Koves TR]] (2021)<br />
::::* ''I provided my .dld files and my doubts were answered fast and clearly.'' - '''[[Tremblay N |Tremblay Nelly ]]''', Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, DE (2021)<br />
::::* ''Our O2ks Rosie and Rupert'' (O2ks) ''returned to service today. The best kind of equipment is the reliable, robust, low maintenance kind.'' - '''[[Pietka Terri A | Terri Pietka]]''', O2k-Network lab: [[US MO St Louis Abumrad NA]] (2020)<br />
<br />
::::* ''What I liked the most about the Virtual On-site Visit was the helpful disposition of the Oroboros Team. They made this course possible amidst the current situation (COVID-19).'' - '''Ayelen Melina Santamans Recchini''', Spanish National Centre for Cardiovascular Research (CNIS), Spain (2020)<br />
<br />
::::* "It has been a pleasure to work with your Oxygraph-devices during the last 13 years. Extremely robust machines." - '''[[Therkelsen AIb|Therkelsen Arent Ib]]''', O2k-Network Lab: [[DK Copenhagen Quistorff B]] (2019)<br />
<br />
::::* "Instruments used to measure respiration in isolated mitochondria primarily include Oroboros O2k (Oroboros Instruments) and Seahorse XF Analyzers (Agilent). In the present review, the Oroboros O2k is primarily focused on because of its advantage in accuracy relative to Seahorse XF Analyzers which are designed for high-throughput qualitative measurements [51]" (page 6). - Lewis MT, Kasper JD, Bazil JN, Frisbee JC, Wiseman RW (2019) Quantification of mitochondrial oxidative phosphorylation in metabolic disease: application to Type 2 diabetes. Int J Mol Sci 20:5271. - [[Lewis 2019 Int J Mol Sci |»Bioblast link«]] <br />
<br />
::::* "And the O2ks are performing wonderfully! They are very well made and the software is great. " - '''[[Bazil Jason N]]''', O2k-Network Lab: [[US MI East Lansing Bazil JN]] (2018)<br />
<br />
::::* "The O2k is doing great! We’ve gotten a tremendous amount of useful data from it. " - '''[[Fessel JP|Fessel Joshua Patrick]]''', O2k-Network Lab: [[US TN Nashville Fessel JP]] (2018)<br />
<br />
::::* "The O2k is working great – it truly is a workhorse that is very amenable to human subjects research." - '''[[Puskarich MA|Puskarich Michael A]]''' (2018).<br />
<br />
::::*"The Oroboros high-resolution respirometer [...] can perform multiple injections sequentially for substrates and chemicals. This makes the Oroboros more flexible for comparison purposes." - Li Z, Gupte AA, Zhang A, Hamilton DJ (2017) Pet imaging and its application in cardiovascular diseases. Methodist Debakey Cardiovasc J 13:29-33.<br />
<br />
::::* ''I wanted to let you know that I am so impressed with your group and their beneficial and fun activities. You seem to have developed a model organization.'' - '''James F Haney''', Prof PhD, Department of Biological Sciences, University of New Hampshire, Durham, NH 03824, USA (2017)<br />
<br />
::::* ''Thanks for your incredible machines!!'' - '''Mike Ihnat''', Associate Professor of Pharmacology, Department of Pharmaceutical Sciences OU College of Pharmacy.<br />
<br />
::::* ''We have expanded our use of the O2k for blood based bioenergetic profiling to several studies and I am very impressed with the results.'' - '''[[Molina AJA| Anthony Molina]]''', O2k-Network Lab: [[US NC Winston-Salem Molina AJA]] (2016).<br />
<br />
::::* ''Science would be more efficient if the Oroboros philosophy was applied in all domains. Thank you.'' - Participant of [[IOC115]]<br />
<br />
::::* ''Thank you for your work in creating the Gentle Science community and amassing the wealth of information at the Bioblast wiki. My experiences working with your machine have been immensely enlightening'' - '''[[Patel M|Patel Miraj]]''', O2k-Network Lab: [[US PA Philadelphia Barsotti RJ]] (2015).<br />
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::::* ''We are more than happy with the O2k. In fact, it is one of the most useful instruments we have in both our laboratories.'' - [[Neuzil Jiri |'''Jirka Neuzil''']]; O2k-Network Labs: [[CZ Prague Neuzil J]], [[AU Queensland Neuzil J]] (2014).<br />
<br />
::::* ''"High resolution designs (i.e., O2k, OROBOROS INSTRUMENTS) maximize respirometric sensitivity and precision (minimal O2 leak and highly sensitive electrodes), reducing the biological sample size required. Software advances in flux derivations of changes in chamber PO2 also permit real-time reporting of respiratory kinetics (Datlab, OROBOROS INSTRUMENTS), which improves data analyses over other systems requiring visual assessments of steady-state kinetics."'' - '''[[Perry CG|Perry CG]], [[Kane DA|Kane DA]], [[Lanza IR|Lanza IR]], [[Neufer PD|Neufer PD]]''' (2013) Methods for assessing mitochondrial function in diabetes. Diabetes 62: 1041-53. » [[Perry 2013 Diabetes |PMID: 23520284]]. O2k-Network Labs: [[CA Guelph Holloway GP]], [[CA Toronto Perry CG]], [[US NC Greenville Neufer PD]], [[CA Antigonish Kane DA]], [[US MN Rochester Nair KS]] (2013).<br />
<br />
::::* ''We love our O2k. We have performed measurements in more than 300 muscle biopsies to date, and Paul Coen and I just got a paper accepted in [[Coen 2013 J Gerontol A Biol Sci Med Sci |Journal of Gerontology]] highlighting the measurements related to function in the elderly.'' - '''[[Goodpaster BH|Bret Goodpaster]]''', O2k-Network Lab: [[US FL Orlando Goodpaster BH]] (2012).<br />
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::::* ''We are so happy with the performance of our two Oroboros machines that we are considering buying a couple more. We tested permeabilized muscle fibers and liver samples, always obtaining an excellent performance. The resolution of the machines goes largely beyond my most optimistic expectations and, so far, I am very positively impressed with their accuracy and experimental possibilities!'' - '''[[Canto_AC|Carlos Canto]]''', O2k-Network Lab: [[CH Lausanne Canto C]] (2012).<br />
<br />
::::* ''Thank you for creating such a wonderful apparatus, it made my work so much easier and much more fun. Thanks also for a great course in Schroecken in the spring of 2009, unforgettable!'' - '''[[Friederich-Persson Malou|Malou Friederich-Persson]]'''; ''DatLab is a fabulous software - so easy to use.'' - '''[[Palm_F|Frederik Palm]]''', O2k-Network Lab: [[SE Uppsala Liss P]] (2012).<br />
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::::* '' ... For an independent perspective on the Oroboros O2k, we think they are fantastic, fullstop. We have had no real issues in almost four years. I started with the general system which requires water baths etc and really it was baptism of fire, and when we got the Oroboros O2k it was a different world. Our only issue now is we need more of them now. Perhaps the best part of our dealings with Oroboros is Erich's groups outstanding efforts to provide detailed methods and protocols for both the machines and experiments... .'' - '''[[Hickey Anthony JR|Anthony JR Hickey]]''', O2k-Network Lab: [[NZ Auckland Hickey AJ]] (2009).<br />
<br />
::::* ''We continue to "spread the word" about the Oroboros with our colleagues at meetings and conferences. As with all quality products, I'm not surprised to hear that demand is steady, even in the face of economic hardships. Yours has the added benefit of sophisticated science and precision manufacturing, which exponentially increases its value. Darrell Neufer and I have a big paper being published in JCI on this upcoming Monday (on-line first). There is Oroboros data all over it. Many more papers are currently being written, as we've been using our O2k's at maximal capacity for the past two years! Would it be possible for you to send a small stack of your "Blue Book of Mitochondria" with the new O2k? It's really an invaluable resource for students and new people that join the lab.'' - '''[[Anderson Ethan J|Ethan J Anderson]]''', O2k-Network Lab: [[US NC Greenville Anderson EJ]] (2009).<br />
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::::* ''I have several papers in the pipeline that utilize respiration as our primary variable. The O2k was one of the best investments I ever made.'' - '''[[Bennett James P|James P Bennett ]]''', O2k-Network Lab: [[US VA Richmond Bennett JP]] (2008).<br />
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::::* ''I would like to congratulate the Oroboros-team for the software that really works beautifully. People who did it are really clever (know how someone using an oxygraph works).'' - '''[[Bouillaud Frederic|Frederic Bouillaud]]''', O2k-Network Lab: [[FR Paris Bouillaud F]] (2008).<br />
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== More O2k-Feedback ==<br />
<br />
::::* Beyond the highlights » [[more O2k-Feedback]]</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=239074Template:Next oroboros ecosystem agenda2023-05-26T07:12:15Z<p>Cecatto Cristiane: </p>
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2023 Week 22<br />
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:::: Registration deadline for »[[EUROMIT2023 Bologna IT]]«<br />
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:{|<br />
| width="110" align="center" | [[File:MitoPedia.jpg|left|80px|MitoPedia|link=MitoPedia]]<br />
|''' Measuring fatty acid oxidation (FAO)-linked respiration requires a low concentration of malate '''<br><br />
In the absence of malate, accumulation of Acetyl-CoA inhibits FAO. <br><br />
- »'''[[Fatty acid oxidation pathway control state]]'''«, »'''[https://www.bioblast.at/index.php/Gnaiger_2020_BEC_MitoPathways Mitochondrial Pathways: Chapter 5]'''« <br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Cardoso Luiza]]« <br />
|}<br />
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:::: '''13:30-14:30 [[Gnaiger Erich|Erich Gnaiger]]''' discussion panel member at '''[[Health Innovation Summit 2023 Vienna AT]]''' - ''Gender data gap''<br />
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:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
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:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
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:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
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<br />
*'''Jul- 17 Mo'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
----<br />
*'''Jul- 18 Tu'''<br />
----<br />
*'''Jul- 19 We'''<br />
----<br />
*'''Jul- 20 Th'''<br />
----<br />
*'''Jul- 21 Fr'''<br />
----<br />
*'''Jul- 22 Sa'''<br />
----<br />
*'''Jul- 23 Su''' <br />
:::: [[Image:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
----<br />
*'''Aug- 01 Tu'''<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
----<br />
*'''Nov- 01 We'''<br />
----<br />
*'''Nov- 02 Th'''<br />
----<br />
*'''Nov- 03 Fr'''<br />
----<br />
2023 Week 45<br />
<br />
*'''Nov- 06 Mo'''<br />
----<br />
*'''Nov- 07 Tu'''<br />
----<br />
*'''Nov- 08 We'''<br />
----<br />
*'''Nov- 09 Th'''<br />
----<br />
*'''Nov- 10 Fr'''<br />
----<br />
2023 Week 46<br />
<br />
*'''Nov- 13 Mo'''<br />
----<br />
*'''Nov- 14 Tu'''<br />
----<br />
*'''Nov- 15 We'''<br />
----<br />
*'''Nov- 16 Th'''<br />
----<br />
*'''Nov- 17 Fr'''<br />
----<br />
2023 Week 47<br />
<br />
*'''Nov- 20 Mo'''<br />
----<br />
*'''Nov- 21 Tu'''<br />
----<br />
*'''Nov- 22 We'''<br />
----<br />
*'''Nov- 23 Th'''<br />
----<br />
*'''Nov- 24 Fr'''<br />
----<br />
2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=238287Template talk:Next oroboros ecosystem agenda2023-04-20T08:37:48Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' The POS might require extensive POS service '''<br><br />
POS with a very dark anode might need several rounds of ammonia cleaning, including overnight exposure in order to get it functional.<br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Your POS might require extensive POS service '''<br><br />
POS with a very dark anode might need several rounds of ammonia cleaning, possibly including an overnight incubation in order to be performant again.<br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Leo Elettra]]«<br />
|}<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=238286Template talk:Next oroboros ecosystem agenda2023-04-20T07:35:18Z<p>Cecatto Cristiane: /* MitoPedia alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
:{|<br />
| width="100" align="center" |[[File:FAT4BRAIN logo.png|right|80px|link=https://wiki.oroboros.at/index.php/FAT4BRAIN|FAT4BRAIN]]<br />
|'''A FAO-mito-CNS platform to help fatty acid-related respiration measurements was developed in the FAT4BRAIN project''' <br><br />
- » [[FAT4BRAIN_FAO-mito-CNS_platform|FAT4BRAIN FAO-mito-CNS platform]] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' The POS might require extensive POS service '''<br><br />
POS with a very dark anode might need several rounds of ammonia cleaning, including overnight exposure in order to get it functional.<br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=238285Template talk:Next oroboros ecosystem agenda2023-04-20T07:29:10Z<p>Cecatto Cristiane: /* O2k-Open Support alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' The POS might require extensive POS service '''<br><br />
POS with a very dark anode might need several rounds of ammonia cleaning, including overnight exposure in order to get it functional.<br />
<br><br />
- »'''[[MiPNet19.18B POS-service|POS service]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=FAT4BRAIN_Symposium_Jena_DE&diff=238206FAT4BRAIN Symposium Jena DE2023-04-18T09:57:09Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{MitoGlobal header page name}}<br />
{{Publication<br />
|title=[[File:FAT4BRAIN logo.png|right|90px|FAT4BRAIN]]'''Jena DE''', 2022 October 20-21. FAT4BRAIN Symposium - Long COVID and acetylcarnitines: From preclinical models to clinical applications and translation potential<br />
|info=[[FAT4BRAIN]]<br />
|authors=FAT4BRAIN<br />
|year=2022-10-20<br />
|journal=MitoGlobal<br />
|abstract='''FAT4BRAIN Symposium - Long COVID and acetylcarnitines: From preclinical models to clinical applications and translation potential, Jena, Germany, 2022'''<br />
}}<br />
<br />
__TOC__<br />
== Venue ==<br />
<br />
:::: Jena DE<br />
:::: Universitätsklinikum Jena<br />
<br />
== Program ==<br />
::::* Download [https://wiki.oroboros.at/images/0/00/F4B_Jena_Symposium_2022-10-20.pdf here]<br />
<br />
<br />
== Participants ==<br />
<br />
{| class="wikitable"<br />
|-<br />
!<br />
! Participant<br />
! Institution<br />
<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Besteher Bianca <br />
| Universitätsklinikum Jena, Jena (DE)<br />
|-<br />
| [[File:Cristiane Cecatto.jpg|70px|Dr. Cristiane Cecatto]]<br />
| [[Cecatto Cristiane]]<br />
| Oroboros Instruments, Innsbruck (AT)<br />
|-<br />
| [[File:Dambrova M.jpg|70px|Participant]]<br />
| [[Dambrova Maija]]<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Danyeli Lena <br />
| Universitätsklinikum Jena, Jena (DE)<br />
|-<br />
<br />
| [[File:Mateus.jpg|70px|Mateus Grings]]<br />
| [[Grings Mateus]]<br />
| Oroboros Instruments, Innsbruck (AT)<br />
<br />
|-<br />
<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Jonsson Jörgen <br />
| Uppsala Universitet, Uppsala (SE)<br />
|-<br />
<br />
| [[File:Profile-icon-9.png|70px|Participant]] <br />
| [[Liepinsh Edgars]]<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
<br />
| [[File:Profile-icon-9.png|70px|Participant]] <br />
| Milaneschi Yuri<br />
| Amsterdam University Medical Centers, Amsterdam (NL)<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Schiöth Helgi<br />
| Uppsala Universitet, Uppsala (SE)<br />
|-<br />
| [[File:Baiba Svalbe.jpg|70px|Participant]]<br />
| [[Svalbe Baiba]]<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Videja Melita]]<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Vilskersts Reinis<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| Walter Martin<br />
| Universitätsklinikum Jena, Jena (DE)<br />
|-<br />
<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Zvejniece Liga]]<br />
| Latvian Institute of Organic Sythesis, Riga (LV)<br />
|-<br />
|}<br />
<br />
<br />
<br />
[[Image:MitoGlobal.jpg|right|80px|link=http://www.bioblast.at/index.php/MitoGlobal|MitoGlobal]] <br />
Listed under [[MitoGlobal Events]].<br />
<br />
== Support ==<br />
This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 857394. [[File:Flag yellow low.jpg|left|100px]]<br />
<br />
{{Labeling<br />
|additional=MitoGlobal, 2022, ORO, FAT4BRAIN<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Current_week_ecosystem_agenda&diff=236846Template:Current week ecosystem agenda2023-03-20T08:56:22Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{Template:Science for Ukraine}}<br />
2023 Week 12<br />
<br />
*'''Mar- 20 Mo'''<br />
----<br />
*'''Mar- 21 Tu'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
----<br />
*'''Mar- 22 We'''<br />
----<br />
*'''Mar- 23 Th'''<br />
----<br />
*'''Mar- 24 Fr''' - World Tuberculosis Day-<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"The molecular structure of the bd oxidase from M. tuberculosis provides the long-sought atomic framework for the design of highly specific drugs to target this respiratory enzyme"''' <br><br />
* Safarian S, Opel-Reading HK, Wu D, Mehdipour AR, Hards K, Harold LK, Radloff M, Stewart I, Welsch S, Hummer G, Cook GM, Krause KL, Michel H (2021) The cryo-EM structure of the bd oxidase from M. tuberculosis reveals a unique structural framework and enables rational drug design to combat TB. [[Safarian 2021 Nat Commun|»Bioblast link«]]<br />
|}<br />
----<br />
*'''Mar- 25 Sa''' <br />
:::: Registration deadline for »[[PDBEB 2023 Coimbra PT]]«<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=236845Template talk:Next oroboros ecosystem agenda2023-03-20T08:56:00Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Problems with your stirrer bar? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
<br />
|}<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=236844Template talk:Next oroboros ecosystem agenda2023-03-20T08:55:43Z<p>Cecatto Cristiane: /* O2k-Open Support alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Problems with your stirrer bar? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
<br />
|}<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=236843Template talk:Next oroboros ecosystem agenda2023-03-20T08:54:59Z<p>Cecatto Cristiane: /* O2k-Open Support alert */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]] <br />
|'''Did you know that a humid environment and/or liquid spillage may lead to a high raw POS signal [V]?'''<br><br />
See how to clean and dry the electrical connections of the OroboPOS-Connector.<br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections|Cleaning the electrical connections]]«<br />
- communicated by »[[Cecatto Cristiane]]« and »[[Baglivo Eleonora]]«<br />
|}<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Problems with your stirrer bar? '''<br><br />
A “jumping” stirrer or a slow rotation of the stirrer bar may indicate a problem either with the stirrer itself or with the cleaning of the glass chamber. <br />
<br><br />
- »'''[https://wiki.oroboros.at/index.php/Stirrer-Bar%5Cwhite_PVDF%5C15x6_mm#Technical_support Stirrer bar - technical support]'''«<br><br />
<br />
|}<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=MiPNet28.05_IOC158_Innsbruck_AT&diff=236057MiPNet28.05 IOC158 Innsbruck AT2023-02-23T07:51:37Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{OROBOROS header page name}}<br />
<br />
{{Publication<br />
|title=[[Image:OROBOROS-solo.png|right|60px|link=OROBOROS INSTRUMENTS]]<br />
<br />
'''Innsbruck AT''', 2023 Feb 27 - Mar 01. O2k-Coaching Days - Basic, '''IOC158'''.<br />
|info=<br />
|authors=Oroboros<br />
|year=2023-02-27<br />
|journal=Mitochondr Physiol Network<br />
|abstract=[[Image:O2k-Workshops.png|left|100px|link=O2k-Workshops]]<br />
'''O2k-Coaching Days''' - Basic. Innsbruck, Austria; 2023 Feb 27 - Mar 01.<br />
|mipnetlab=AT_Innsbruck_Oroboros, AT_Innsbruck_MitoFit<br />
}}<br />
<br />
<br />
[[Image:O2k-Workshops.png|right|150px|link=http://wiki.oroboros.at/index.php/Oroboros_Events#Next_O2k-Workshops|O2k-Workshops]]<br />
__TOC__<br />
<br />
<br />
<br />
== General information ==<br />
:::: '''O2k-Coaching Days - Basic''' is a training course which provides a fundamental introduction to high-resolution respirometry (HRR) with the Oroboros O2k. We will give you an overview of the O2k-FluoRespirometer, including real-time analysis with DatLab 8 and applications of the Titration-Injection microPump TIP2k. Hands-on sessions range from OroboPOS technical service (instrumental quality control system which is an essential component of HRR) to respirometry experiments with substrate-uncoupler-inhibitor titration (SUIT) protocols. Also the Oroboros SUITbrowser will be presented. The Oroboros SUITbrowser helps you to find the best SUIT protocol for your specific research questions. Many optimized SUIT protocols are available as DL-Protocols and will be shown at the O2k-Coaching Days.<br />
<br />
::::'''COVID-19'''<br />
:::: The event will be held in accordance with current COVID regulations. A primary concern must be the safety of our participants and staff, which is why we reserve the right to cancel the event if there are any concerns/restrictions. Refunds will be issued exclusively for registration fees. Oroboros Instruments will not reimburse any travel or accommodation expenses.<br />
<br />
<br />
== Venue ==<br />
::::» Oroboros O2k-Laboratory<br />
::::: Schoepfstrasse 18, 6020 Innsbruck<br />
::::» Information on travel and venue: '''[[IOC Innsbruck]]'''.<br />
<br />
== Program ==<br />
::::* Preliminary program available here: [[File:PDF.jpg|100px|link=https://wiki.oroboros.at/images/0/07/MiPNet28.05_IOC158_Innsbruck_O2k-Coaching_Days.pdf |Bioblast pdf]]<br />
<br />
<br />
== Registration ==<br />
:::: Download registration form, fill in and sign the PDF and return it to us: [https://wiki.oroboros.at/images/6/6f/Registration_form_IOC158.pdf Registration form]<br />
:::: The Oroboros O2k-Coaching Days are limited to 12 participants. Registration on first-come-first serve basis.<br />
<br />
<br />
== Tutors and lecturers ==<br />
<gallery mode=default perrow=6 widths="140px" heights="150px"><br />
File:CardosoLHD.JPG|'''[[Cardoso LHD|Luiza Cardoso]]''', PhD, Oroboros Instruments - ''Mitochondrial Wizard''<br />
File:Mateus.jpg|'''[[Grings Mateus|Mateus Grings]]''', PhD, Oroboros Instruments - ''Mitochondrial Jedi''<br />
File:Erich Gnaiger.jpg|'''[[Gnaiger E |Erich Gnaiger]]''', PhD, Oroboros Instruments - CEO, ''Innovation Alchemist''<br />
File:GuerthP.jpg|'''[[Guerth Patrizia|Patrizia Guerth]]''', Oroboros Instruments - ''Laboratory Technician''<br />
File:Timon-Gomez_A.jpg|'''[[Timon-Gomez Alba|Alba Timon-Gomez]]''', PhD, Oroboros Instruments - ''Mitochondrial Mage''<br />
</gallery><br />
<br />
== Participants ==<br />
<br />
{| class="wikitable"<br />
|-<br />
!<br />
! Participant<br />
! Institution<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Hopfauf Denise]]<br />
| '''AT_Innsbruck_Weiss G''' - Medical University of Innsbruck, AT<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Korzh Stanislava]]<br />
| '''[[LV_Riga_Liepins E]]''' - Latvian Institute of Organic Synthesis, LV <br />
|-<br />
| [[File:Pertler E.PNG|70px|Participant]]<br />
| [[Pertler Elke]]<br />
| '''AT_Innsbruck_Zoller H''' - Medical University of Innsbruck, AT<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Prime Tracy]]<br />
| '''[[UK_Cambridge_Whitworth A]]''' - University of Cambridge, UK<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| [[Videja Melita]]<br />
| '''[[LV_Riga_Liepins E]]''' - Latvian Institute of Organic Synthesis, LV <br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| <br />
| '''AT Innsbruck Keller M''' - Medical University of Innsbruck, AT<br />
|-<br />
| [[File:Profile-icon-9.png|70px|Participant]]<br />
| <br />
| '''AT Innsbruck Keller M''' - Medical University of Innsbruck, AT<br />
|-<br />
|}<br />
<br />
<br />
== IOC recommended reading ==<br />
::::» '''[[IOC recommended reading]]'''<br />
::::» '''[[MitoPedia: Respiratory states]]'''<br />
:::: [[Image:P.jpg|link=OXPHOS capacity|35px|OXPHOS]] [[Image:R.jpg|link=ROUTINE respiration|35px|ROUTINE]] [[Image:E.jpg|link=ET capacity|35px|ETS]] [[Image:L.jpg|link=LEAK respiration|35px|LEAK]] [[Image:ROX.jpg|link=Residual oxygen consumption|65px|ROX]]<br />
<br />
<br />
== Contact ==<br />
:::: Oroboros Instruments GmbH<br />
:::: High-Resolution Respirometry <br />
:::: Schoepfstrasse 18<br />
:::: A-6020 Innsbruck, Austria<br />
:::: Tel: +43 512 566796<br />
:::: Fax: +43 512 566796 20 <br />
:::: E-Mail: [mailto:instruments@oroboros.at| instruments@oroboros.at]<br />
:::: '''Mitochondria and Cell Research'''<br />
<br />
[[Image:MitoGlobal.jpg|right|80px|link=MitoGlobal|MitoGlobal]] <br />
O2k-Workshops and O2k-Coaching Days are listed as [[MitoGlobal Events]].<br />
<br />
{{Labeling<br />
|additional=ORO, IOC, MitoGlobal, NextGen-O2k, MitoFit, 2023, Next, O2k-Network Award,<br />
}}<br />
<br />
[[Category:O2k-Workshops]]</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=FAT4BRAIN_ESR_Workshop&diff=235761FAT4BRAIN ESR Workshop2023-02-09T07:07:33Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{MitoGlobal header page name}}<br />
{{Publication<br />
|title=[[File:FAT4BRAIN logo.png|right|90px|FAT4BRAIN]]'''Riga, LV''', 2023 February 09-10. FAT4BRAIN ESR Workshop - WIDESPREAD PROJECT.<br />
|info=[[FAT4BRAIN]]<br />
|authors=FAT4BRAIN<br />
|year=2023-02-09<br />
|journal=MitoGlobal<br />
|abstract='''FAT4BRAIN ESR Workshop, 2023'''<br />
}}<br />
<br />
__TOC__<br />
<br />
== General information ==<br />
:::: This is the fifth FAT4BRAIN workshop for project partners in a series on career development for Early Stage Researchers (ESRs) called 'How to become a successful researcher' and will focus on the topic: International networking and Grant writing. This will be a hybrid event with some attendees joining online and in-person in Riga, LV. <br />
<br />
== Venue ==<br />
:::: Wellton Riverside SPA Hotel<br />
:::: 33, 11. Novembra krastmala<br />
:::: Riga LV<br />
<br />
== Organizers ==<br />
:::: LIOS, Riga (LV)<br />
::::: [[Videja Melita|Melita Videja]]<br />
<br />
== Program ==<br />
:::: Proposed program can be found [https://wiki.oroboros.at/images/8/82/F4B_Networking%26Grant_writing_training_Agenda_-_CET_Final.pdf here]<br />
<br />
[[Image:MitoGlobal.jpg|right|80px|link=http://www.bioblast.at/index.php/MitoGlobal|MitoGlobal]] <br />
Listed under [[MitoGlobal Events]].<br />
<br />
== Support ==<br />
This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 857394. [[File:Flag yellow low.jpg|left|100px]]<br />
<br />
{{Labeling<br />
|additional=MitoGlobal, 2023, ORO, FAT4BRAIN<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=File:F4B_Networking%26Grant_writing_training_Agenda_-_CET_Final.pdf&diff=235760File:F4B Networking&Grant writing training Agenda - CET Final.pdf2023-02-09T07:05:53Z<p>Cecatto Cristiane: </p>
<hr />
<div></div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=FAT4BRAIN_ESR_Workshop&diff=235731FAT4BRAIN ESR Workshop2023-02-07T11:07:19Z<p>Cecatto Cristiane: </p>
<hr />
<div>{{MitoGlobal header page name}}<br />
{{Publication<br />
|title=[[File:FAT4BRAIN logo.png|right|90px|FAT4BRAIN]]'''Riga, LV''', 2023 February 09-10. FAT4BRAIN ESR Workshop - WIDESPREAD PROJECT.<br />
|info=[[FAT4BRAIN]]<br />
|authors=FAT4BRAIN<br />
|year=2023-02-09<br />
|journal=MitoGlobal<br />
|abstract='''FAT4BRAIN ESR Workshop, 2023'''<br />
}}<br />
<br />
__TOC__<br />
<br />
== General information ==<br />
:::: This is the fifth FAT4BRAIN workshop for project partners in a series on career development for Early Stage Researchers (ESRs) called 'How to become a successful researcher' and will focus on the topic: International networking and Grant writing. This will be a hybrid event with some attendees joining online and in-person in Riga, LV. <br />
<br />
== Venue ==<br />
:::: Wellton Riverside SPA Hotel<br />
:::: 33, 11. Novembra krastmala<br />
:::: Riga LV<br />
<br />
== Organizers ==<br />
:::: LIOS, Riga (LV)<br />
::::: [[Videja Melita|Melita Videja]]<br />
<br />
== Program ==<br />
:::: Proposed program can be found [https://wiki.oroboros.at/images/1/1a/F4B_NetworkingGrant_writing_training_Agenda_-_CET.pdf here]<br />
<br />
[[Image:MitoGlobal.jpg|right|80px|link=http://www.bioblast.at/index.php/MitoGlobal|MitoGlobal]] <br />
Listed under [[MitoGlobal Events]].<br />
<br />
== Support ==<br />
This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 857394. [[File:Flag yellow low.jpg|left|100px]]<br />
<br />
{{Labeling<br />
|additional=MitoGlobal, 2023, ORO, FAT4BRAIN<br />
}}</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template:Next_oroboros_ecosystem_agenda&diff=235706Template:Next oroboros ecosystem agenda2023-02-06T13:48:09Z<p>Cecatto Cristiane: </p>
<hr />
<div><br />
2023 Week 7<br />
<br />
*'''Feb- 13 Mo''' - International Epilepsy Day<br />
----<br />
*'''Feb- 14 Tu'''<br />
:: [[Image:O2k-Workshops.png|60px|link=MiPNet28.03 IOC157 Los Angeles US]] '''[[MiPNet28.03 IOC157 Los Angeles US|Oroboros O2k-Workshop on high-resolution respirometry (HRR) IOC 157 Los Angeles US]]''' Feb 14-16<br />
----<br />
*'''Feb- 15 We''' - International Childhood Cancer Day<br />
----<br />
*'''Feb- 16 Th'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Do you observe simultaneous fluctuations in the O<sub>2</sub> slope neg. and the Peltier power?'''<br><br />
This can indicate fluctuations in the room temperature or electrical supply. Controlling the temperature or changing the electrical supply may resolve this problem. <br />
<br><br />
- »'''[[Flux_/_Slope#Oxygen_slope_neg._fluctuating|Troubleshooting]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Schmitt Sabine]]«<br />
|}<br />
----<br />
*'''Feb- 17 Fr'''<br />
----<br />
*'''Feb- 18 Sa'''<br />
:::: '''»[[BPS2023 San Diego US]]«''' Feb 18-22<br />
----<br />
*'''Feb- 19 Su'''<br />
:::: '''09:30 (GMT-9) [[Gnaiger Erich|Erich Gnaiger]] presenting at [[BPS2023 San Diego US]]''' - ''Mitochondrial bioenergetics – a quantitative analytical and diagnostic approach''<br />
:::: '''13:45 (GMT-9) [[Schmitt Sabine|Sabine Schmitt]] poster session at at [[BPS2023 San Diego US]]''' - ''Contribution of fatty acid oxidation to respiratory control in brain mitochondria''<br />
2023 Week 8<br />
<br />
*'''Feb- 20 Mo'''<br />
:::: '''»[[BPS2023 San Diego US]]«''' Feb 18-22<br />
:::: '''13:45 (GMT-9) [[Gnaiger Erich|Erich Gnaiger]] poster session at at [[BPS2023 San Diego US]]''' - ''Respirometric substrate-uncoupler-inhibitor titration protocols for carbohydrate and fatty acid metabolism: from heart to brain mitochondria''<br />
:::: Abstract submission deadline for »[[ATSPB 2023 Hall in Tirol AT]]«<br />
----<br />
*'''Feb- 21 Tu'''<br />
----<br />
*'''Feb- 22 We''' - World Encephalitis Day<br />
----<br />
*'''Feb- 23 Th'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Add catalase when measuring Complex IV (CIV) activity in permeabilized fibers (pfi)'''<br><br />
Pfi have a high content of iron-containing proteins, which accelerate the autoxidation of tetramethyl-p-phenylenediamine (TMPD) in the CIV assay. Catalase prevents the accumulation of H<sub>2</sub>O<sub>2</sub> generated by this autooxidation.<br />
<br><br />
- »'''[[MiPNet06.06_Chemical_O2_background|Chemical Background]]'''« and »'''[[Complex IV]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Schmitt Sabine]]«<br />
|}<br />
----<br />
*'''Feb- 24 Fr'''<br />
----<br />
2023 Week 9<br />
<br />
*'''Feb- 27 Mo'''<br />
[[Image:O2k-Workshops.png|60px|link=MiPNet28.05 IOC158 Innsbruck AT]] <big>'''[[MiPNet28.05 IOC158 Innsbruck AT|158<sup>th</sup> Oroboros O2k-Coaching Days - Basic]]'''</big> Feb 27 - Mar 1<br />
----<br />
*'''Feb- 28 Tu''' - Rare Disease Day<br />
[[Image:O2k-Workshops.png|60px|link=MiPNet28.05 IOC158 Innsbruck AT]] <big>'''[[MiPNet28.05 IOC158 Innsbruck AT|158<sup>th</sup> Oroboros O2k-Coaching Days - Basic]]'''</big> Feb 27 - Mar 1<br />
<br />
:{|<br />
| width="100" align="center" |[[File:BEC2022.5.jpg|right|150px|link=https://doi.org/10.26124/bec:2022-0005 | Balbaisi 2022 BEC]]<br />
|'''Balbaisi and Stiban review the current knowledge on Barth Syndrome, a rare disease affecting the production of cardiolipin, the only phospholipid specific to mitochondria.''' <br><br />
* Balbaisi A, Stiban J (2022) Barth syndrome: a genetic ailment with a lipid component and bioenergetic ramifications. Bioenerg Commun 2022.5. https://doi.org/10.26124/bec:2022-0005<br />
|}<br />
:::: Abstract deadline for »[[EUROMIT2023 Bologna IT]]«<br />
----<br />
*'''Mar- 01 We'''<br />
[[Image:O2k-Workshops.png|60px|link=MiPNet28.05 IOC158 Innsbruck AT]] <big>'''[[MiPNet28.05 IOC158 Innsbruck AT|158<sup>th</sup> Oroboros O2k-Coaching Days - Basic]]'''</big> Feb 27 - Mar 1<br />
----<br />
*'''Mar- 02 Th'''<br />
----<br />
*'''Mar- 03 Fr''' - World Wildlife Day<br />
----<br />
2023 Week 10<br />
<br />
*'''Mar- 06 Mo'''<br />
----<br />
*'''Mar- 07 Tu'''<br />
----<br />
*'''Mar- 08 We''' - International Women's Day<br />
----<br />
*'''Mar- 09 Th'''<br />
----<br />
*'''Mar- 10 Fr''' - World Kidney Day<br />
----<br />
2023 Week 11<br />
<br />
*'''Mar- 13 Mo'''<br />
----<br />
*'''Mar- 14 Tu'''<br />
----<br />
*'''Mar- 15 We'''<br />
----<br />
*'''Mar- 16 Th'''<br />
----<br />
*'''Mar- 17 Fr'''<br />
----<br />
2023 Week 12<br />
<br />
*'''Mar- 20 Mo'''<br />
----<br />
*'''Mar- 21 Tu'''<br />
----<br />
*'''Mar- 22 We'''<br />
----<br />
*'''Mar- 23 Th'''<br />
----<br />
*'''Mar- 24 Fr'''<br />
----<br />
*'''Mar- 25 Sa''' <br />
:::: Early bird registration deadline for »[[EUROMIT2023 Bologna IT]]«<br />
----<br />
2023 Week 13<br />
<br />
*'''Mar- 27 Mo'''<br />
----<br />
*'''Mar- 28 Tu'''<br />
----<br />
*'''Mar- 29 We'''<br />
----<br />
*'''Mar- 30 Th'''<br />
----<br />
*'''Mar- 31 Fr'''<br />
:::: Abstract submission deadline for »[[MiPschool Obergurgl 2023]]« & »[[MiP2023 Obergurgl AT]]«<br />
----<br />
2023 Week 14<br />
<br />
*'''Apr- 03 Mo'''<br />
----<br />
*'''Apr- 04 Tu'''<br />
----<br />
*'''Apr- 05 We'''<br />
----<br />
*'''Apr- 06 Th'''<br />
----<br />
*'''Apr- 07 Fr'''<br />
----<br />
2023 Week 15<br />
<br />
*'''Apr- 10 Mo'''<br />
----<br />
*'''Apr- 11 Tu'''<br />
----<br />
*'''Apr- 12 We'''<br />
----<br />
*'''Apr- 13 Th'''<br />
:::: '''»[[ATSPB 2023 Hall in Tirol AT]]«''' Apr 13-15<br />
----<br />
*'''Apr- 14 Fr'''<br />
:::: Early registration deadline for »[[MiPschool Obergurgl 2023]]« & »[[MiP2023 Obergurgl AT]]«<br />
----<br />
2023 Week 16<br />
<br />
*'''Apr- 17 Mo'''<br />
----<br />
*'''Apr- 18 Tu'''<br />
----<br />
*'''Apr- 19 We'''<br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.04 FAT4BRAIN IOC159 Riga LV]] <big>'''[[MiPNet28.04 FAT4BRAIN IOC159 Riga LV|FAT4BRAIN 159<sup>th</sup> O2k-Workshop]]'''</big><br />
----<br />
*'''Apr- 20 Th'''<br />
:::: [[File:FAT4BRAIN logo.png|100px|FAT4BRAIN|link=FAT4BRAIN Symposium Riga LV]] <big>»'''[[FAT4BRAIN Symposium Riga LV]]'''« </big> April 20-21<br />
:::: '''»[[Mitochondrial Dysfunction and Neurodegeneration 2023 Nottingham UK]]«''' Apr 20-21<br />
----<br />
*'''Apr- 21 Fr'''<br />
----<br />
2023 Week 17<br />
<br />
*'''Apr- 24 Mo'''<br />
----<br />
*'''Apr- 25 Tu'''<br />
----<br />
*'''Apr- 26 We'''<br />
----<br />
*'''Apr- 27 Th'''<br />
----<br />
*'''Apr- 28 Fr'''<br />
----<br />
2023 Week 18<br />
<br />
*'''May- 01 Mo'''<br />
----<br />
*'''May- 02 Tu'''<br />
----<br />
*'''May- 03 We'''<br />
----<br />
*'''May- 04 Th'''<br />
----<br />
*'''May- 05 Fr'''<br />
----<br />
2023 Week 19<br />
<br />
*'''May- 08 Mo'''<br />
----<br />
*'''May- 09 Tu'''<br />
----<br />
*'''May- 10 We'''<br />
----<br />
*'''May- 11 Th'''<br />
----<br />
*'''May- 12 Fr'''<br />
----<br />
2023 Week 20<br />
<br />
*'''May- 15 Mo'''<br />
----<br />
*'''May- 16 Tu'''<br />
----<br />
*'''May- 17 We'''<br />
----<br />
*'''May- 18 Th'''<br />
----<br />
*'''May- 19 Fr'''<br />
----<br />
2023 Week 21<br />
<br />
*'''May- 22 Mo''' <br />
----<br />
*'''May- 23 Tu'''<br />
----<br />
*'''May- 24 We'''<br />
----<br />
*'''May- 25 Th'''<br />
----<br />
*'''May- 26 Fr'''<br />
----<br />
2023 Week 22<br />
<br />
*'''May- 29 Mo'''<br />
----<br />
*'''May- 30 Tu''' <br />
:::: Registration deadline for »[[EUROMIT2023 Bologna IT]]«<br />
----<br />
*'''May- 31 We'''<br />
----<br />
*'''Jun- 01 Th'''<br />
----<br />
*'''Jun- 02 Fr'''<br />
----<br />
<br />
2023 Week 23<br />
<br />
*'''Jun- 05 Mo'''<br />
----<br />
*'''Jun- 06 Tu'''<br />
----<br />
*'''Jun- 07 We'''<br />
:::: '''»[[ESCI 2023 Prague CZ]]«''' Jun 7-9<br />
----<br />
*'''Jun- 08 Th'''<br />
:::: '''»[[International GIBB Meeting 2023 Riva del Garda IT]]«''' Jun 8-10<br />
----<br />
*'''Jun- 09 Fr'''<br />
----<br />
*'''Jun- 10 Sa'''<br />
----<br />
*'''Jun- 11 Su'''<br />
:::: '''»[[EUROMIT2023 Bologna IT]]«''' Jun 11-15<br />
2023 Week 24<br />
<br />
*'''Jun- 12 Mo'''<br />
:::: '''»[[EUROMIT2023 Bologna IT]]«''' Jun 11-15<br />
----<br />
*'''Jun- 13 Tu'''<br />
----<br />
*'''Jun- 14 We'''<br />
----<br />
*'''Jun- 15 Th'''<br />
----<br />
*'''Jun- 16 Fr'''<br />
----<br />
2023 Week 25<br />
<br />
*'''Jun- 19 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 20 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 21 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 22 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 23 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
*'''Jun- 24 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.01 IOC Schroecken AT]] <big> '''[[MiPNet28.01 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Jun 19-24<br />
----<br />
2023 Week 26<br />
<br />
*'''Jun- 26 Mo'''<br />
----<br />
*'''Jun- 27 Tu'''<br />
----<br />
*'''Jun- 28 We'''<br />
----<br />
*'''Jun- 29 Th'''<br />
----<br />
*'''Jun- 30 Fr'''<br />
----<br />
2023 Week 27<br />
<br />
*'''Jul- 03 Mo'''<br />
----<br />
*'''Jul- 04 Tu'''<br />
----<br />
*'''Jul- 05 We'''<br />
----<br />
*'''Jul- 06 Th'''<br />
----<br />
*'''Jul- 07 Fr'''<br />
----<br />
2023 Week 28<br />
<br />
*'''Jul- 10 Mo'''<br />
----<br />
*'''Jul- 11 Tu'''<br />
----<br />
*'''Jul- 12 We'''<br />
----<br />
*'''Jul- 13 Th'''<br />
----<br />
*'''Jul- 14 Fr'''<br />
----<br />
*'''Jul- 15 Sa'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
----<br />
2023 Week 29<br />
<br />
*'''Jul- 17 Mo'''<br />
:::: '''»[[2nd Mitochondria Conference 2023 Lisbon PT]]«''' Jul 15-18<br />
----<br />
*'''Jul- 18 Tu'''<br />
----<br />
*'''Jul- 19 We'''<br />
----<br />
*'''Jul- 20 Th'''<br />
----<br />
*'''Jul- 21 Fr'''<br />
----<br />
*'''Jul- 22 Sa'''<br />
----<br />
*'''Jul- 23 Su''' <br />
:::: [[Image:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
2023 Week 30<br />
<br />
*'''Jul- 24 Mo''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 25 Tu''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 26 We''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27<br />
----<br />
*'''Jul- 27 Th''' <br />
:::: [[File:MiP school logo 2023.png|60px|link=MiPschool Obergurgl 2023]] <big> '''[[MiPschool Obergurgl 2023|MiP''school'' Obergurgl 2023]]'''</big> Jul 23-27 <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 28 Fr''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 29 Sa''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
*'''Jul- 30 Su''' <br />
:::: [[File:MiP conference logo 2023.png|60px|link=MiP2023 Obergurgl AT]] <big> '''[[MiP2023 Obergurgl AT|15<sup>th</sup> MiP''conference'': Bioenergetics Communications on mitObesity Obergurgl 2023]]'''</big> Jul 27-30<br />
----<br />
2023 Week 31<br />
<br />
*'''Jul- 31 Mo'''<br />
----<br />
*'''Aug- 01 Tu'''<br />
----<br />
*'''Aug- 02 We'''<br />
----<br />
*'''Aug- 03 Th'''<br />
----<br />
*'''Aug- 04 Fr'''<br />
----<br />
*'''Aug- 05 Sa'''<br />
----<br />
*'''Aug- 06 Su'''<br />
:::: '''»[[GRS on Organellar Channels and Transporters 2023 Castelldefels ES]]«''' Aug 6-11<br />
----<br />
2023 Week 32<br />
<br />
*'''Aug- 07 Mo'''<br />
:::: '''»[[GRS on Organellar Channels and Transporters 2023 Castelldefels ES]]«''' Aug 6-11<br />
----<br />
*'''Aug- 08 Tu'''<br />
----<br />
*'''Aug- 09 We'''<br />
----<br />
*'''Aug- 10 Th'''<br />
----<br />
*'''Aug- 11 Fr'''<br />
----<br />
2023 Week 33<br />
<br />
*'''Aug- 14 Mo'''<br />
----<br />
*'''Aug- 15 Tu'''<br />
----<br />
*'''Aug- 16 We'''<br />
----<br />
*'''Aug- 17 Th'''<br />
----<br />
*'''Aug- 18 Fr'''<br />
----<br />
2023 Week 34<br />
<br />
*'''Aug- 21 Mo'''<br />
----<br />
*'''Aug- 22 Tu'''<br />
----<br />
*'''Aug- 23 We'''<br />
----<br />
*'''Aug- 24 Th'''<br />
----<br />
*'''Aug- 25 Fr'''<br />
----<br />
2023 Week 35<br />
<br />
*'''Aug- 28 Mo'''<br />
----<br />
*'''Aug- 29 Tu'''<br />
----<br />
*'''Aug- 30 We'''<br />
----<br />
*'''Aug- 31 Th'''<br />
----<br />
*'''Sep- 01 Fr'''<br />
----<br />
2023 Week 36<br />
<br />
*'''Sep- 04 Mo'''<br />
----<br />
*'''Sep- 05 Tu'''<br />
----<br />
*'''Sep- 06 We'''<br />
----<br />
*'''Sep- 07 Th'''<br />
----<br />
*'''Sep- 08 Fr'''<br />
----<br />
2023 Week 37<br />
<br />
*'''Sep- 11 Mo'''<br />
----<br />
*'''Sep- 12 Tu'''<br />
----<br />
*'''Sep- 13 We'''<br />
----<br />
*'''Sep- 14 Th'''<br />
----<br />
*'''Sep- 15 Fr'''<br />
----<br />
2023 Week 38<br />
<br />
*'''Sep- 18 Mo'''<br />
----<br />
*'''Sep- 19 Tu'''<br />
----<br />
*'''Sep- 20 We'''<br />
----<br />
*'''Sep- 21 Th'''<br />
----<br />
*'''Sep- 22 Fr'''<br />
----<br />
2023 Week 39<br />
<br />
*'''Sep- 25 Mo'''<br />
----<br />
*'''Sep- 26 Tu'''<br />
----<br />
*'''Sep- 27 We'''<br />
----<br />
*'''Sep- 28 Th'''<br />
----<br />
*'''Sep- 29 Fr'''<br />
----<br />
2023 Week 40<br />
<br />
*'''Oct- 02 Mo''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 03 Tu''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 04 We''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 05 Th''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 06 Fr''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
*'''Oct- 07 Sa''' <br />
:::: [[Image:O2k-Workshops.png|60px|link=MiPNet28.02 IOC Schroecken AT]] <big> '''[[MiPNet28.02 IOC Schroecken AT|Oroboros O2k-Workshop IOC Schroecken AT]]'''</big> Oct 2-7<br />
----<br />
2023 Week 41<br />
<br />
*'''Oct- 09 Mo'''<br />
----<br />
*'''Oct- 10 Tu'''<br />
----<br />
*'''Oct- 11 We'''<br />
----<br />
*'''Oct- 12 Th'''<br />
----<br />
*'''Oct- 13 Fr'''<br />
----<br />
2023 Week 42<br />
<br />
*'''Oct- 16 Mo'''<br />
----<br />
*'''Oct- 17 Tu'''<br />
----<br />
*'''Oct- 18 We'''<br />
----<br />
*'''Oct- 19 Th'''<br />
----<br />
*'''Oct- 20 Fr'''<br />
----<br />
2023 Week 43<br />
<br />
*'''Oct- 23 Mo'''<br />
----<br />
*'''Oct- 24 Tu'''<br />
----<br />
*'''Oct- 25 We'''<br />
----<br />
*'''Oct- 26 Th'''<br />
----<br />
*'''Oct- 27 Fr'''<br />
----<br />
2023 Week 44<br />
<br />
*'''Oct- 30 Mo'''<br />
----<br />
*'''Oct- 31 Tu'''<br />
----<br />
*'''Nov- 01 We'''<br />
----<br />
*'''Nov- 02 Th'''<br />
----<br />
*'''Nov- 03 Fr'''<br />
----<br />
2023 Week 45<br />
<br />
*'''Nov- 06 Mo'''<br />
----<br />
*'''Nov- 07 Tu'''<br />
----<br />
*'''Nov- 08 We'''<br />
----<br />
*'''Nov- 09 Th'''<br />
----<br />
*'''Nov- 10 Fr'''<br />
----<br />
2023 Week 46<br />
<br />
*'''Nov- 13 Mo'''<br />
----<br />
*'''Nov- 14 Tu'''<br />
----<br />
*'''Nov- 15 We'''<br />
----<br />
*'''Nov- 16 Th'''<br />
----<br />
*'''Nov- 17 Fr'''<br />
----<br />
2023 Week 47<br />
<br />
*'''Nov- 20 Mo'''<br />
----<br />
*'''Nov- 21 Tu'''<br />
----<br />
*'''Nov- 22 We'''<br />
----<br />
*'''Nov- 23 Th'''<br />
----<br />
*'''Nov- 24 Fr'''<br />
----<br />
2023 Week 48<br />
<br />
*'''Nov- 27 Mo'''<br />
----<br />
*'''Nov- 28 Tu'''<br />
----<br />
*'''Nov- 29 We'''<br />
----<br />
*'''Nov- 30 Th'''<br />
----<br />
*'''Dec- 01 Fr'''<br />
----<br />
2023 Week 49<br />
<br />
*'''Dec- 04 Mo'''<br />
----<br />
*'''Dec- 05 Tu'''<br />
----<br />
*'''Dec- 06 We'''<br />
----<br />
*'''Dec- 07 Th'''<br />
----<br />
*'''Dec- 08 Fr'''<br />
----<br />
2023 Week 50<br />
<br />
*'''Dec- 11 Mo'''<br />
----<br />
*'''Dec- 12 Tu'''<br />
----<br />
*'''Dec- 13 We'''<br />
----<br />
*'''Dec- 14 Th'''<br />
----<br />
*'''Dec- 15 Fr'''<br />
----<br />
2023 Week 51<br />
<br />
*'''Dec- 18 Mo'''<br />
----<br />
*'''Dec- 19 Tu'''<br />
----<br />
*'''Dec- 20 We'''<br />
----<br />
*'''Dec- 21 Th'''<br />
----<br />
*'''Dec- 22 Fr'''<br />
----<br />
2023 Week 52<br />
<br />
*'''Dec- 25 Mo'''<br />
----<br />
*'''Dec- 26 Tu'''<br />
----<br />
*'''Dec- 27 We'''<br />
----<br />
*'''Dec- 28 Th'''<br />
----<br />
*'''Dec- 29 Fr'''<br />
----</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=235705Template talk:Next oroboros ecosystem agenda2023-02-06T13:47:30Z<p>Cecatto Cristiane: /* Next */</p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristianehttps://wiki.oroboros.at/index.php?title=Template_talk:Next_oroboros_ecosystem_agenda&diff=235704Template talk:Next oroboros ecosystem agenda2023-02-06T13:44:59Z<p>Cecatto Cristiane: </p>
<hr />
<div>__TOC__<br />
<br />
::::[[User:Antunes Diana|Antunes Diana]] ([[User talk:Antunes Diana|talk]]) 08:58, 5 May 2020 (CEST) Format for new Agenda/Alerts entries:<br />
<pre style="display: inline-block;"><br />
{|<br />
| logos<br />
| title in bold <br><br />
- link<br />
|}<br />
</pre><br />
<br />
''e.g.,''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Did you know that the proper use of TIP2k-Filter Papers may avoid an unstable O2 slope neg. signal during Instrumental background correction?''' <br><br />
- »[[Oxygen_flux_-_instrumental_background#Unstable_O2_slope_neg._signal_in_O2_instrumental_BG|Instrumental background]]« and »[[TIP2k Filter Papers]]«<br />
|}<br />
:::: ''See the scheme'':<br />
<br><br />
[[Image:TEMPLATE ALERT.png|none|900px|Agenda/Alerts body text format]]<br />
<br />
== Bioblast alert 2021 ==<br />
Prep for circular:<br />
<br />
== MitoPedia alert ==<br />
<br />
<br />
=== Next ===<br />
:{|<br />
| width="100" align="center" |[[File:NextGenO2k logo.jpg|right|80px|link=https://www.oroboros.at/index.php/product/nextgen-o2k_photobiology/|NextGen-O2k PhotoBiology]]<br />
<br />
|'''An article and video about the NextGen-O2k PhotoBiology Module which was nominated for the Tyrolean Innovation Prize, were recently published.''' <br><br />
- » [https://www.wko.at/site/tiroler-innovationspreis/oroboros.html Read here (German text)] «<br />
|}<br />
<br />
== O2k-Brief alert ==<br />
<br />
=== Next ===<br />
<br />
== O2k-Publications alert ==<br />
<br />
<br />
===='''Author names of O2k-Publications/ Brief for the Agenda vs Bioblast''' ==== <br />
::1.Oroboros Ecosystem Agenda: SOP: Surname with long version and First name with short version. Please, see: [https://wiki.oroboros.at/index.php/File:TEMPLATE_ALERT.png Template alerts].<br />
:::Example: [https://wiki.oroboros.at/index.php/O2k-Publications_alert Oroboros Ecosystem Agenda example]<br />
:::This means that '''we have to edit manually the author names''' within the O2k-Publications/ Brief alerts (i.e., Antunes Diana (from Bioblast) to Antunes D (to Agenda entries)) if they are long or copy from the gray box.<br />
::2.Bioblast: SOP: [https://www.bioblast.at/index.php/Form:Publication] – examples are available using both Surname and First name with long version (e.g., Antunes Diana). If in Bioblast the authors are with short surname in the links please update it to complete surname, guidelines are below.<br />
<br />
__NOTOC__ [[File:Expand.png|right|25px|Click to expand or collaps]]<br />
<div class="toccolours mw-collapsible mw-collapsed"><br />
'''Guidelines to update a reference'''<br />
<div class="mw-collapsible-content"><br />
::When creating an O2k-Publication/Brief alert, it is the responsibility of the author to check if the reference is accordingly to the correct guidelines:<br />
[[File:Reference example.png|900px]]<br />
::Correct format for a person called “First Name Surname”: <br />
::In the gray box should be “Surname FN” - '''From where references to be used as O2k-Publication/Brief alerts are copied from.'''<br />
[[File:Gray box reference.png|900px]]<br />
::In the links should be “ Surname First N”<br />
[[File:Authors names links reference.png|900px]]<br />
::'''How to edit:'''<br />
:::A) Check if all authors with profiles in Bioblast (blue links) have their profiles with full name. If they have, proceed to next step (B). If not, you need to move it following the steps “How to move a profile” below.<br />
:::B) Click in “Edit with form”.<br />
:::C) The gray box is edited in “Reference” and the links are changed in “Author(s)”. Change it accordingly and click in “save page” at the end of the page.<br />
[[File:Editing reference.png|900px]]<br />
<br />
'''How to move a profile (instructions sent by Marija):'''<br />
<br />
So let’s take for example my page: <br />
[[Beno M]] <br />
[https://wiki.oroboros.at/index.php?title=Beno_Marija&redirect=no]<br />
<br />
::As you can see there is a redirect from Beno Marija to Beno M. What has to be done is to switch the content of those pages. Here are the steps: <br />
:::1. Go to e.g. “Beno M” on edit<br />
:::2. Click on “Move”<br />
:::3. Change the new title to the full name of the person. In my case it will be Beno M to Beno Marija <br />
[[File:BenoMreference.jpg|500px]]<br />
:::4. Now it should look like that: <br />
[[File:BenoMarijaReference.png|500px]]<br />
:::5. Click on “Move” and leave all the ticked boxes<br />
:::6.Done<br />
::After that you can continue in step B.<br />
::If you have any doubt you can contact Cristiane, Marija or Mario.<br />
</div><br />
</div><br />
<br />
=== Next ===<br />
<br />
<br />
in preparation<br />
<br />
::: Once available (and if open access) promote the FAT4BRAIN publication:Acylcarnitines: Nomenclature, biomarkers, therapeutic potential, drug targets and clinical trials (Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Duygu Sen Z, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schiöth HB in Pharmacological Reviews<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[Image:O2k-Publications.jpg|70px|link=http://wiki.oroboros.at/index.php/O2k-Publications:_Topics |O2k-Publications in the MiPMap]]<br />
|'''"text [text]"''' <br><br />
* citation [[add link here|»Bioblast link«]]<br />
:from the O2k-Network »[[link]]« and »[[link]]« <br />
|}<br />
<br />
== O2k-Open Support alert ==<br />
<br />
::::* While in Home Office: [[User:Gnaigere|Gnaigere]] ([[User talk:Gnaigere|talk]]) 14:03, 19 March 2020 (CET) https://wiki.oroboros.at/index.php/Talk:O2k-Open_Support_alert - Many labs will move to home office mode. In line with our special DL7.4 home office offer (see Agenda today), therefore, I suggest to post in our Agenda '''analysis-linked''' O2k-Open Support cases during this time, and collect real-time operation cases for future releases.<br />
=== Next ===<br />
<br />
* '''month-xx ''' <br />
<br />
* '''May-xx '''<br />
<br />
This one needs an update of the Bioblast page and clarification of MiPNet06.03<br />
* '''month-xx ''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Did you enter the correct oxygen solubility factor in DatLab?'''<br><br />
The oxygen solubility factor of the incubation medium, F<sub>M</sub>, expresses the effect of the salt concentration on oxygen solubility relative to pure water. The correct oxygen solubility factor of your experimental medium or buffer needs to be entered in DatLab for proper calculation of the oxygen concentration.<br />
<br><br />
- »'''[[Oxygen solubility factor|Oxygen solubility factor]]'''«<br><br />
- communicated by »[[Schmitt Sabine]]« and »[[ ]]«<br />
<br />
|}<br />
<br />
This one needs a BioBlast link:<br />
*'''Month-##'''<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' When filling in the volume of uncoupler in the DatLab mark or the excel template, should one enter the total volume added or the volume to get to the highest flux?'''<br><br />
The volume added until the mark, equal to the highest flux, should be entered. Anything titrated after this mark should be summed to the other volumes before the next mark because this will be considered to calculate the sample dilution. <br />
<br><br />
- »'''[[LINK|LINK]]''' and '''[[MiPNet24.06_Oxygen_flux_analysis_-_DatLab_7.4|O<sub>2</sub> flux analysis with DatLab 7.4]]'''«<br><br />
- communicated by »[[Cardoso Luiza]]« and »[[ ]]«<br />
|}<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|''' Add catalase when measuring Complex IV (CIV) activity in permeabilized fibers (pfi)'''<br><br />
Pfi have a high content of iron-containing proteins, which accelerate the autoxidation of tetramethyl-p-phenylenediamine (TMPD) in the CIV assay. Catalase prevents the accumulation of H<sub>2</sub>O<sub>2</sub> generated by this autooxidation.<br />
<br><br />
- »'''[[MiPNet06.06_Chemical_O2_background|Chemical Background]]'''« and »'''[[Complex IV]]'''«<br><br />
- communicated by »[[Cecatto Cristiane]]« and »[[Schmitt Sabine]]«<br />
<br />
|}<br />
<br />
<br />
<br />
=== Under discussion ===<br />
<br />
<br />
<br />
<br />
<br />
=== Removed for correction ===<br />
* '''Nov-30 Mo''' <br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Blue-info.png|25px|Info: improve]]<br />
|'''Noisy oxygen signal? Check the OroboPOS and OroboPOS-Connector to clean electrical connections.'''<br><br />
Contaminating grease, salt crystals and moisture can be removed with a dry paper cloth or a paper cloth moistened with water and then absolute ethanol. <br><br />
- »[[OroboPOS-Connector#Cleaning_the_electrical_connections |Cleaning the electrical connections]]« <br><br />
- communicated by »[[Schmitt Sabine]]« and »[[Komlodi Timea]]«<br />
|}<br />
WGT recommended not to use water for cleaning. Erich introduced water for cleaning to remove salt crystals.<br />
<br />
<br />
:{|<br />
| width="110" align="center" | [[Image:O2k-Support.jpg|60px|link=http://wiki.oroboros.at/index.php/O2k-Open_Support |O2k-Open Support]][[File:Red-loss of data.png|25px|Warning: loss of data]]<br />
|'''Do you perform the ''leaky chamber test'' after chamber assembly? '''<br><br />
An unnoticed leak from the chamber may affect your data, therefore we recommend performing the ''Leaky chamber test'' - especially after chamber reassembly. <br><br />
- »[[Talk:O2k-Chamber_MitoPedia#Leaky_Chamber|Leaky chamber test]]« and » https://intern.oroboros.at/index.php/Overnight_test_after_O2k-chamber_assembly«<br />
|}<br />
<br />
== O2k-Open Support alert circulars ==<br />
<br />
== In preparation ==<br />
<br />
<br />
:{|<br />
| width="100" align="center" |[[File:MitoFit Preprints.png|100px|link=https://wiki.oroboros.at/images/2/23/Fischer_2022_MitoFit_Fe.pdf |MitoFit pdf]]<br />
|'''From preprint to journal publication:'''<br><br />
Fischer C, Valente de Souza L, Komlódi T, Garcia-Souza LF, Volani C, Tymoszuk P, Demetz E, Seifert M, Auer K, Hilbe R, Brigo N, Petzer V, Asshoff M, Gnaiger E, Weiss G (2022) Mitochondrial respiration in response to iron deficiency anemia. Comparison of peripheral blood mononuclear cells and liver. Metabolites 12:270. https://doi.org/10.3390/metabo12030270<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]«<br />
|}<br />
*'''###-## Mo'''<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
=== MitoFit Preprints ===<br />
<br />
*'''###-## Tu'''<br />
:{|<br />
| width="100" align="center"|[[Image:BEC-logo.png|100px|link=https://www.bioenergetics-communications.org/index.php/bec |Bioenergetics Communications]]<br />
|'''From preprint to BEC manuscript with published Open Peer Reviews:'''<br><br />
*Komlódi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. [[doi:10.26124/BEC:2021-0004]]<br />
:from the O2k-Network »[[AT Innsbruck Oroboros]]« <br />
|}<br />
<br />
=== Data analysis templates and MipNets ===<br />
<br />
== For discussion ==<br />
''Here we discuss suggestions for the Oroboros Ecosystem Agenda 2020 ('''if''' the specific alert section is yet to be attributed)''<br />
<br />
:{|<br />
| width="100" align="center" | [[Image:SUIT icon.jpg|80px|link=https://wiki.oroboros.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] <br />
| Controlled stability of the [https://www.oroboros.at/index.php/product/mitokit-cii MitoKit-CII] based on HPLC and LCMS analysis: No degradation of [[MitoKit-CII| MitoKit-CII]] compounds [[MitoKit-CII/Succinate-nv| MitoKit-CII/Succinate-nv (NV118)]] and [[MitoKit-CII/Malonate-nv| MitoKit-CII/Malonate-nv (NV161)]] for following storage conditions:<br />
* Proven -80 °C solid stability for more than 3 years (3 years 7 months)<br />
* Proven -20 °C solid stability for 1 year<br />
* Proven DMSO stability at room temperature for 1 week<br />
* Proven DMSO stability at -20 °C for 6 months (ongoing)<br />
|}<br />
<br />
== 2021 ==<br />
<br />
::::* 2021-01-06 https://www.jstor.org/stable/1706346?seq=1<br />
<br />
== Postponed events ==<br />
::::[[File:ASMRM LOGO.JPG|75px|link=https://wiki.oroboros.at/index.php/Asia_Society_for_Mitochondrial_Research_and_Medicine ASMRM]]'''[[ASMRM 2020 Singapore SG]]'''<br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MitoEAGLE Summit Obergurgl 2020]]'''</big><br />
:::: [[Image:MITOEAGLE-logo.jpg|60px|link=http://www.mitoeagle.org/index.php/MitoEAGLE|COST Action MitoEAGLE]] <big>'''[[MiPschool Obergurgl 2020]]'''</big><br />
<br />
<br />
:::: [[Image:O2k-Network.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.09 IOC San Diego CA US |<big>'''San Diego CA US'''</big>]]<br />
<br />
::::* Abstracts deadline [https://www.cebitec.uni-bielefeld.de/events/conferences/575-algal-biotech-202 10th Int. CeBiTec Research Conference Advances in Industrial Biotechnology: Prospects and challenges for the development of algal biotechnology]<br />
<br />
::::[[File:Bioenergetics Vienna 2020.jpg|200px |link=Bioenergetics_Vienna_2020#Programme]] '''<big>[[Bioenergetics Vienna 2020]]</big>'''<br />
:::: [[Image:O2k-Workshops.png|70px|O2k-Workshops|link=O2k-Events#Next_O2k-Workshops]] [[MiPNet25.02 IOC Schroecken AT |<big>'''IOC Schroecken AT'''</big>]]<br />
<br />
<br />
:::: »<big>'''[[36th Congress Czech Nutrition Society 2020 Hradec Kralove CZ]]'''</big>« (Sep 10-12)</div>Cecatto Cristiane