O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
- mt-Medicine (363 entries)
- Exercise physiology;nutrition;life style
- Comparative MiP;environmental MiP
- Pharmacology;toxicology
- mt-Biogenesis;mt-density
- Genetic knockout;overexpression
- Instruments;methods
Pathological states
- Alphabetical order
- Aging;senescence
- Alzheimer's
- Autism
- Cancer
- Cardiovascular
- COPD
- Diabetes
- Inherited
- Infectious
- Myopathy
- Neurodegenerative
- Obesity
- Parkinson's
- Sepsis
- Other
Stress conditions
- Alphabetical order
- Cell death
- Cryopreservation
- Hypoxia
- Ischemia-reperfusion injury and preservation
- Mitochondrial disease;degenerative disease and defect
- Oxidative stress;RONS
- Permeability transition
- Temperature: hypothermia; hyperthermia
Organisms
- Mammals
- Human
- Pig
- Horse
- Bovines
- Cat
- Dog
- Rabbit
- Mouse
- Rat
- Guinea pig
- Other mammals: including only mammals that are not listed as mammalian species above'.
- Model organisms
- Chicken (Β» Birds)
- Zebrafish (Β» Fishes)
- Drosophila (Β» Hexapods)
- Caenorhabditis elegans (Β» Nematodes)
- Artemia (Β» Crustaceans)
- Saccharomyces cerevisiae (Β» Fungi)
- Comparative MiP
- Non-mammals
- Birds (Β» Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); Β» Zebrafish
- Hexapods - insects, springtails; Β» Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; Β» Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes Β» Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; Β» Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 188 263 2 Genital 92 123 3 Heart 724 936 4 Kidney 150 183 5 Liver 646 841 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1106 1370
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 259 294 3 Fibroblast 207 271 4 Islet cell;pancreas;thymus 55 67 5 Lymphocyte 58 76 6 Platelet 121 151 7 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 43 50 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
- Intact organism β’β’ Intact organ β’β’ Intact cells β’β’ Permeabilized cells β’β’ Permeabilized tissue β’β’ Homogenate β’β’ Isolated mitochondria β’β’ SMP β’β’ Chloroplasts β’β’ Enzyme β’β’ Oxidase and biochemical oxidation
Enzymes
- Alphabetical order
β’β’ Adenine nucleotide translocase β’β’ Complex I β’β’ Complex II;succinate dehydrogenase β’β’ Complex III β’β’ Complex IV;cytochrome c oxidase β’β’ Complex V;ATP synthase β’β’ Inner mt-membrane transporter β’β’ Marker enzyme β’β’ Supercomplex β’β’ TCA cycle and matrix dehydrogenases β’β’ Uncoupling protein
Regulation
- Alphabetical order
β’β’ ADP β’β’ ATP production β’β’ Aerobic glycolysis β’β’ Amino acid β’β’ Calcium β’β’ Coupling efficiency;uncoupling β’β’ Cyt c β’β’ Fatty acid β’β’ Flux control β’β’ Inhibitor β’β’ Ion;substrate transport β’β’ mt-Membrane potential β’β’ Oxygen kinetics β’β’ Q-junction effect β’β’ Redox state β’β’ Substrate β’β’ Temperature β’β’ Threshold;excess capacity β’β’ Uncoupler
Coupling control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2867 3096 2 R ROUTINE respiration Physiological state, intact cells 894 981 3 E Electron transfer system capacity Maximal noncoupled respiration 0 0 4 L LEAK respiration Resting state, non-phosphorylating respiration 2613 2772
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 609 753 2 N N-pathway control state NADH-linked, level 4 2475 2623 3 S S-pathway control state Succinate-linked, level 3 1686 1794 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1580 1637 8 Other 133 149 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1521 1573
MiPMap combinations - examples
- Examples for specific combinations
- O2k-Publications: Human skeletal muscle β’β’ O2k-Publications: Human heart β’β’ O2k-Publications: Skeletal muscle - human vs mouse
- Browse data
O2k-Manuals and protocols and specific instrumental applications
- O2k-Manual β’β’ Instruments;methods β’β’ TIP2k β’β’ O2k-Fluorometryβ’β’ O2k-Fluorometry - Fluorophoresβ’β’ TPP + ISE-Module β’β’ O2k-pH ISE-Module β’β’ Theoretical background β’β’ O2k-Protocols β’β’ PBI Shredder